Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29740 606 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 573 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 518 / 1e-171 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 497 / 2e-163 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G07650 474 / 6e-155 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 447 / 2e-144 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 434 / 6e-140 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 417 / 3e-133 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 414 / 1e-131 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 334 / 7e-102 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G073700 [exp] 1284 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 1267 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G075400 [exp] 1244 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 1213 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073466 [exp] 1182 / 0 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 1182 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073091 [exp] 1097 / 0 AT1G29740 944 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073266 [exp] 1043 / 0 AT1G29740 532 / 9e-178 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073616 [exp] 981 / 0 AT1G29740 908 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 512 / 6e-170 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 438 / 5e-142 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031374 [exp] 437 / 3e-139 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 429 / 1e-137 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 410 / 2e-129 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 398 / 2e-125 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 366 / 2e-114 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 288 / 8e-85 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 255 / 3e-74 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10004046 [exp] 132 / 1e-31 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G073341.1 pacid=42780866 polypeptide=Potri.011G073341.1.p locus=Potri.011G073341 ID=Potri.011G073341.1.v4.1 annot-version=v4.1 ATGTTAACGATTTTTCAGCTTTGCCAGGTTATGGTGATGATCAGTTTCTGGAGCTCTATTACTTTGCTTGCTTCTGATCAGCTGCATCCAGGGGAAGTTG AAGCGTTAAGACAAATCGGTAAGACAGTAAACGAGGATGGCCAACTATCCTTGAAGTTCGTCGATCGTTGTCAACAGAGTGGAGTCGTTGAGACAGTACT GACTTCTGCTCCACCAAACTTAGAAGGGAACAGCACCATCGAATGTAACTGCAGCATCACTGATGATAATTACTGTCACATTACTTCATTCCAGCTCAAA GATTACAGTCTTCCAGGCAGGCTTCCTCCGGAATTGGCCAACCTTACTTATGTCCAAAAAATAGATTTCACTCGCAACTATCTATACGGCACAATTCCGG TGGAATGGGCTTCGATGAAATATCTGTCTTTCATCTCGCTTACTGCAAATCGCTTGTCAGGAAATATTCCTGCCCATTTGGGAAGTTTTACTGCTCTCGC CTACTTGAGCCTTGAATCAAATCAGTTTTCTGGTGTTGTCCCACCTGAGCTTGGCAAGCTTGTCAACTTAAAAAATCTGATACTCTCCGGCAATAAGTTA GTGGGGACCTTGCCAGAGGCACTTGCGCAGATAAAAGACTTGAAGGATTTTCGCGTAAGTGATAATAATCTTAATGGCACCGTACCCGAGTTCATTGGGA ACTGGACTCAACTTCAAAAGCTTGAATTGTACGCGACTGGATTGCAAGGACCTATACCTCTTGCGATTTTTCATTTGGAAAAGTTGTCTGATTTGAGGAT TGCTGATATGCCTGGACCAGAGTTTCAGTTACCTAAAAAGCCGATTGAAAGGAAATACTTGGTTCTGAGGAATATCAATTTAGCTGGAACAATCCCAGAA GACGCATGGAAAGTGGAAAAAACACTCGACTTAACTTTTAACAAGTTGGTTGGGGAGATTCCTCCTACTACAATACGACGACAGTTTACGTTTTTGAGTG GCAACAAGCTGACTGGAACAGTGCAAGACTCATTCCTCCAAAACAGCCAAAATCTTGATGTTTCGTACAATAACTTTTCACGGTCACCAAGATGCAGCAG CAGTAACGGGAATAATATAAACTGGTTTCGAAGCTCGTCCAGCTATAATAACTTAAGCGATCTTCTTCCATGCTCAGAGATATCTCGGTGCCCAAAATAT TATCGTTCATTCTATATAAACTGTGGTGGACAAGATGTAAAGAATGGGAGAATCTTGTATGAAGGTGATCAAGATAGTGAAAGTAATGCTGCTGCAAGGA GTTATTATAGATTAGGATCAAACTGGGGATTCAGCAGCACAGGAGATTTCATGGATGATAACAACTTCAATGATAACAAATATACGCTTCAATCAAATTC TAATATTTCTCTGGTTGACTTTGGATTGTATGCAACCGCACGTAAAACTCCCCTGTCTATCACGTATTATGGATATTGTCTAGAAAATGGGAATTACACT GTCAGACTCCACTTTGCTGAGATACAATTCACAGATGAAAAACTGTACAACAAAGTTGCAAGGCGAGTTTTTGATATTTACATTCAGGGAATACAAGTGC AAAAGGATTTTAACTTTACAGAGGAAGCCAAAGGATCTAACAGAAATTTCACAATAGCATTCAACACCGCTGTGACAGACCGTACCCTGGAGATCCGATT ATACTGGGCTGGAAAAGGCACTACTAGCATTCCAAGAAGAGGAAATTATGGTCCTATAATTTCTGCTATATCCGTATGTTCAGGTTACAGAACTTATTGT GAAGAACCTGAGGAAGCAAGTAAGAAACCTATTGTGATCGGAGTTGTCACTTCAGCAGCGTTCCTTATTCTCTTGGTAATGGGTGTCATTTATTGGAAGT TCTGCTATGGAGACAAATACACAAGAGAACGAGGTGCAGAGCTTAAAGGGCTAGATTTGAAAACTGGTTCCTTCACCTTGAGGCAGCTAAAAGCGACCCC TGACAATTTCAATTCAGAAAACAAGATTGGAGAGGGTGGTTTGGGATCCGTATACAAGGGTGAAACCTCGTCTTTAATTTGA
AA sequence Show only first row Show all	>Potri.011G073341.1 pacid=42780866 polypeptide=Potri.011G073341.1.p locus=Potri.011G073341 ID=Potri.011G073341.1.v4.1 annot-version=v4.1 MLTIFQLCQVMVMISFWSSITLLASDQLHPGEVEALRQIGKTVNEDGQLSLKFVDRCQQSGVVETVLTSAPPNLEGNSTIECNCSITDDNYCHITSFQLK DYSLPGRLPPELANLTYVQKIDFTRNYLYGTIPVEWASMKYLSFISLTANRLSGNIPAHLGSFTALAYLSLESNQFSGVVPPELGKLVNLKNLILSGNKL VGTLPEALAQIKDLKDFRVSDNNLNGTVPEFIGNWTQLQKLELYATGLQGPIPLAIFHLEKLSDLRIADMPGPEFQLPKKPIERKYLVLRNINLAGTIPE DAWKVEKTLDLTFNKLVGEIPPTTIRRQFTFLSGNKLTGTVQDSFLQNSQNLDVSYNNFSRSPRCSSSNGNNINWFRSSSSYNNLSDLLPCSEISRCPKY YRSFYINCGGQDVKNGRILYEGDQDSESNAAARSYYRLGSNWGFSSTGDFMDDNNFNDNKYTLQSNSNISLVDFGLYATARKTPLSITYYGYCLENGNYT VRLHFAEIQFTDEKLYNKVARRVFDIYIQGIQVQKDFNFTEEAKGSNRNFTIAFNTAVTDRTLEIRLYWAGKGTTSIPRRGNYGPIISAISVCSGYRTYC EEPEEASKKPIVIGVVTSAAFLILLVMGVIYWKFCYGDKYTRERGAELKGLDLKTGSFTLRQLKATPDNFNSENKIGEGGLGSVYKGETSSLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073341 [exp]	0	1
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148100 [exp]	5.00	0.8584
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148200 [exp]	8.60	0.8685
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G212000 [exp]	12.04	0.8891
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.008G153300 [exp]	42.00	0.8375
AT4G27290			S-locus lectin protein kinase ...		Potri.001G410800 [exp]	42.48	0.8390
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036000 [exp]	44.63	0.8427
AT5G16810			Protein kinase superfamily pro...		Potri.019G050500 [exp]	56.28	0.8405
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Potri.002G234400 [exp]	65.17	0.8361
AT1G78340		ATGSTU22	glutathione S-transferase TAU ...		Potri.005G037801 [exp]	65.45	0.7793
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	71.76	0.8357

Compare expression of checked genes

Potri.011G073341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.