Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29740 137 / 2e-37 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 130 / 1e-34 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 124 / 1e-32 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 107 / 7e-27 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G53430 94 / 4e-22 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 93 / 8e-22 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 84 / 1e-18 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 84 / 1e-18 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 72 / 2e-14 Leucine-rich repeat transmembrane protein kinase (.1) AT1G63430 70 / 7e-14 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G073266 [exp] 345 / 1e-116 AT1G29740 532 / 9e-178 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G075400 [exp] 342 / 2e-111 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073341 [exp] 331 / 3e-110 AT1G29740 606 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073491 [exp] 309 / 2e-106 AT1G29740 292 / 2e-90 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 327 / 8e-106 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 324 / 8e-105 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 314 / 7e-101 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073466 [exp] 310 / 2e-99 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 297 / 2e-94 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 109 / 2e-27 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005550 [exp] 100 / 2e-24 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 97 / 6e-23 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 93 / 1e-21 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 93 / 2e-21 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 90 / 1e-20 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 70 / 8e-14 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 68 / 6e-13 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10008712 [exp] 66 / 3e-12 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 65 / 6e-12 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G073416.1 pacid=42780407 polypeptide=Potri.011G073416.1.p locus=Potri.011G073416 ID=Potri.011G073416.1.v4.1 annot-version=v4.1 ATGTTCTTAGCATGTTTCAAAATATCTGAGAGTTTTTCCCTGCCTGTCTCATGTCGACAAATAAAAAACTTATTCGAGCTTTTGCAGCCAATTTTGCAGC ACAGGATGCTAATGATGTTTCAGCTTTGCCAAGTTATGGTGATGATTAGTTTCTCGAGCTCTATTACTTTGCTTGCTTCTGATCAGCTACATCCAGGAGA AGTTGAAGCGTTAAGACAAATCGGTAAGACAGTAAACGAGGATGGCCAACTATCCTTGAAGTTCGTCGATAGTTGTCAACAGAAAGGAGTCGTTGAGACA GAACTGAATTCTGCTCCACCAAACTTAGAAGGGAACAGCACCATCGGATGTAACTGCAGCATCACTGATGATAATTACTGTCACATTACTTCATTCCAGC TCAAAGATTACAGTCTTCCAGGCAGGCTTCCTCCGGAATTGGCCAACCTTACTTGTGTCCAAAAAATAGATTTCACTCGCAACTATCTATACGGCACAAT TCCGGTGGAATGGGCTTCGATGAAAAATCTGTCTTTCATCTCGCTTACTGCAAATCGCTTGTCAGGAAATATTCCTGGACATTTGGGAAGTTTTACTGCC ATCACCTACTTGAGCCTTGAATCAAATCATTTCTGGTGTTGTCCCACCTGA
AA sequence Show only first row Show all	>Potri.011G073416.1 pacid=42780407 polypeptide=Potri.011G073416.1.p locus=Potri.011G073416 ID=Potri.011G073416.1.v4.1 annot-version=v4.1 MFLACFKISESFSLPVSCRQIKNLFELLQPILQHRMLMMFQLCQVMVMISFSSSITLLASDQLHPGEVEALRQIGKTVNEDGQLSLKFVDSCQQKGVVET ELNSAPPNLEGNSTIGCNCSITDDNYCHITSFQLKDYSLPGRLPPELANLTCVQKIDFTRNYLYGTIPVEWASMKNLSFISLTANRLSGNIPGHLGSFTA ITYLSLESNHFWCCPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073416 [exp]	0	1
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073801 [exp]	5.56	0.7523
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073441 [exp]	10.81	0.7140
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073266 [exp]	12.40	0.6595
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.002G068600 [exp]	24.41	0.7135	GT2.3
AT3G22550			Protein of unknown function (D...		Potri.005G211500 [exp]	27.49	0.6503
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G079400 [exp]	48.25	0.6510
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G230000 [exp]	54.49	0.6702
AT1G35710			Protein kinase family protein ...		Potri.019G122500 [exp]	60.97	0.6332
AT4G27220			NB-ARC domain-containing disea...		Potri.005G042400 [exp]	64.86	0.6517
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.001G066200 [exp]	76.15	0.6070

Compare expression of checked genes

Potri.011G073416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.