Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29740 610 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 587 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 561 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 545 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 538 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT3G14840 526 / 1e-176 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 517 / 8e-174 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 499 / 2e-166 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 496 / 6e-165 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 414 / 3e-133 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G075400 [exp] 1142 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073616 [exp] 1141 / 0 AT1G29740 908 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 1088 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 1088 / 0 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 1087 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073466 [exp] 1072 / 0 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073091 [exp] 1058 / 0 AT1G29740 944 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 1043 / 0 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072666 [exp] 1034 / 0 AT1G29740 926 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 557 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 533 / 9e-178 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 519 / 3e-175 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 490 / 4e-165 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005550 [exp] 495 / 1e-164 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 458 / 9e-150 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 443 / 2e-145 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 445 / 4e-144 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 382 / 6e-121 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 233 / 5e-71 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G073441.1 pacid=42782352 polypeptide=Potri.011G073441.1.p locus=Potri.011G073441 ID=Potri.011G073441.1.v4.1 annot-version=v4.1 ATGCCTGGACCAGAGTTTCAGTTACCTAACTCGCCGATTGAAAGGCAATTCTTGGTTCTGAGGAACATCAATTTAACTGGAACAATCCCAGAAAACGCAT GGAAAGTGGAAAAAACACTCGACTTAACTTTTAACAAGTTGGTTGGGGAGATTCCTCCTAATACAATACGACGACGACAGTTTACGTTTTTGAGTGGCAA CAAGCTGACTGGAACAGTGCAAGACTCATTCCTCCAAAACAGCCAAAATCTCGATGTTTGGTACAATAACTTTTCACGGTCTCCAAGATGCAGCAGCAGT AACGAGAATAATATAAACTGGTTTCGAAGCTCGTCCAGCAATAATAAATTAAGAGATCTTCTTCCATGCTCAGAGATATCTCGGTGCCCAAAATATTATC GTTCATTCCATATAAACTGTGGTGGACAAGATGTAAAGAATGGGAAAATCTTGTATGAAGGTGATCAAGATAGTGGAAGTAATGCTGCTGCAAGGTGTTA TAATAGATCAGGATCAAACTGGGGATTCAGCAGCACAGGAGATTTCATGGATGATGAAAATTTCTATGATAACAAATATACGCTTCAATCAAATTCTAAT ATTTCTCTAGTTGACTTTGGATTGTATGCAACAGCACGTAAAACTCCCCTGTCTATCACTTATTATGGATATTGTCTAGAAACTGGGAATTACACTGTCA GACTCCACTTTGCTGAGATAGAATTCACATATGAAAAACTGTACAACAAAGTTGCAAGGCGCGTTTTTTATATTTACATTCAGGGAATACAAGTGCAAAA GGATTTTAACTTTACAAAGGAAGCCCAGGGATCGAACAGAAGTTTCACAAGAGCATATAATACCACCGTGACAGACCGTACCCTGGAGATCCGATTATAC TGGGCTGGAAAAGGCACTACTGTCATTCCAATAAGAGGAAATTATGGTCCTATAATTTCTGCTATATCCGTATGTTCAGGTTACAGAACTTATTGTGAAG AGCCTGAGGAAACAAGTAAGAAACCTATTGTGATCGGAGTTGTCACTTCAGCAGTATTCCTTATTTTCTTGGTAATGGGTGTCATTTATTGGAAGCTCTG CTACGGAGACAAATACACAAGAGAACGAGAACTTAAAGGGCTGGATTTGAAAACTGGTTCCTTCACCTTGAGGCAGCTAAAAGCGGCCACTGACAATTTC AATTCAGAAAACAAGATTGGAGAGGGTGGTTTTGGATCCGTATACAAGGGTGAATTAGCAGATGGTACTATTATTGCTGTTAAGCAGCTATCTCCAAAAT CCAGGCAAGGAAACCGTGAATTTGTGAACGAAATAGGCATTATATCTTGTTTACAGCATCCCAATCTTGTAAGGCTTTATGGATGCTGTATTGAAGGAGA CCAGTTGCTTCTGGTGTACGAGTACATGGAAAACAACTCCCTCTCTCGTGCACTTTTCGGTTCCGAAACAAGTGCCCTGATGTTGGATTGGACTACAAGG TATAAGATATGTGTTGGAATAGCCAGAGGTTTAGCATTTCTCCATGAAGGATCTGCAATCAGGATTGTACACAGGGACATCAAAGGTACAAATGTATTAC TGGACAAAGATCTAAATGCCAAGATATCAGACTTTGGACTAGCTAAGCTCAATGAAGAGGAGAACACTCACATTAGCACTCGTGTTGCCGGAACCATGCC CATGTACTGCAAAAAAAGGGAAATTTAA
AA sequence Show only first row Show all	>Potri.011G073441.1 pacid=42782352 polypeptide=Potri.011G073441.1.p locus=Potri.011G073441 ID=Potri.011G073441.1.v4.1 annot-version=v4.1 MPGPEFQLPNSPIERQFLVLRNINLTGTIPENAWKVEKTLDLTFNKLVGEIPPNTIRRRQFTFLSGNKLTGTVQDSFLQNSQNLDVWYNNFSRSPRCSSS NENNINWFRSSSSNNKLRDLLPCSEISRCPKYYRSFHINCGGQDVKNGKILYEGDQDSGSNAAARCYNRSGSNWGFSSTGDFMDDENFYDNKYTLQSNSN ISLVDFGLYATARKTPLSITYYGYCLETGNYTVRLHFAEIEFTYEKLYNKVARRVFYIYIQGIQVQKDFNFTKEAQGSNRSFTRAYNTTVTDRTLEIRLY WAGKGTTVIPIRGNYGPIISAISVCSGYRTYCEEPEETSKKPIVIGVVTSAVFLIFLVMGVIYWKLCYGDKYTRERELKGLDLKTGSFTLRQLKAATDNF NSENKIGEGGFGSVYKGELADGTIIAVKQLSPKSRQGNREFVNEIGIISCLQHPNLVRLYGCCIEGDQLLLVYEYMENNSLSRALFGSETSALMLDWTTR YKICVGIARGLAFLHEGSAIRIVHRDIKGTNVLLDKDLNAKISDFGLAKLNEEENTHISTRVAGTMPMYCKKREI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073441 [exp]	0	1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073616 [exp]	1.41	0.9207
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G155100 [exp]	2.23	0.7995	HAT1.3
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G075400 [exp]	2.82	0.8426
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	4.00	0.8043
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	4.58	0.8208	Pt-NPH4.2
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.008G131700 [exp]	5.47	0.7855	GAI.2
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.001G406500 [exp]	10.81	0.7674
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073416 [exp]	10.81	0.7140
AT5G47510			Sec14p-like phosphatidylinosit...		Potri.001G158700 [exp]	11.48	0.7564
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	16.73	0.7705

Compare expression of checked genes

Potri.011G073441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.