Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29740 261 / 3e-79 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 241 / 6e-72 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 236 / 3e-70 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 235 / 4e-70 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 229 / 1e-67 RKF1 receptor-like kinase in flowers 1 (.1.2) AT3G14840 218 / 8e-64 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 209 / 6e-61 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 200 / 2e-57 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 194 / 2e-55 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 166 / 1e-45 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G073341 [exp] 550 / 0 AT1G29740 606 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072966 [exp] 544 / 0 AT1G29740 1006 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073700 [exp] 543 / 0 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073441 [exp] 512 / 1e-180 AT1G29740 612 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G075400 [exp] 525 / 4e-180 AT1G29740 1012 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073616 [exp] 520 / 9e-180 AT1G29740 908 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072866 [exp] 520 / 1e-177 AT1G29740 1024 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073466 [exp] 519 / 1e-177 AT1G29740 1018 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 511 / 2e-174 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 236 / 1e-69 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 229 / 4e-68 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 214 / 7e-63 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 215 / 2e-62 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 214 / 3e-62 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10005550 [exp] 193 / 5e-55 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 183 / 3e-51 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 142 / 3e-37 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 138 / 5e-36 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10004166 [exp] 55 / 5e-08 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G073566.1 pacid=42782349 polypeptide=Potri.011G073566.1.p locus=Potri.011G073566 ID=Potri.011G073566.1.v4.1 annot-version=v4.1 ATGTCTAATGGTATACTAGTTTTATGTGCTGCAGGTTATCGTTCATTCCATATAAACTGTGGTGGACAAGATGTAAAGAATGGGAAAATCTTGTATGAAG GTGATCAAGATAGTGAAAGTAATGCTGCTGCAAGGAGTTATTATAGATTAGGATCAAACTGGGGATTCAGCAGCACAGGAGATTTCATGGATGATAACAA CTTCAATGATAACAAATATACGCTTCAATCAAATTCTAATATTTCTCTGGTTGACTTTGGATTGTATGCAACAGCTCGTAAAACTCCCCTGTCTATCACT TATTATGGATATTGTCTAGAAAATGGGAATTACACTGTCAGACTCCACTTTGCTGAGATACAATTCACAGATGAAAAACTGTACAACAAAGTTGCAAGGC GCGTTTTTGATATTTACATTCAGGGAATACAAGTGCAAAAGGATTTTAACTTTACAGAGGAAGCCAAAGGATCTAACAGAAATTTCACAATAGCATTCAA CACCACTGTGACAGACCGTACCCTGGAGATCCGATTATACTGGGCTGGAAAAGGCACTACTAGCATTCCAAGAAGAGGAAATTATGGTCCTATAATTTCT GCTATATCCGTATGTTCAGGTTACAGAACTTATTGTGAAGAACCTGAGGAAGCAAGTAAGAAACCTATTGTGATCGGAGTTGTCACTTCAGCAGCGTTCC TTATTCTCTTGGTAATGGGTGTCATTTATTGGAAGCTCTGCTATGGAGACAAATACACAAGAGAACGAGAGCTTAAAGGGCTAGATTTGAAAACTGGTTC CTTCACCTTGAGGCAGCTAAAAGCGACCCCTGACAATTTCAATTCAGAAAACAAGATTGGAGAGGGTGGTTTGGGATCCGTATACAAGAACTTAAGTGAC CAAACTGAAAATGGTCATTTCACATCTCAAAATAGCCATTTGAAACAGAGCCGTTTCATGGACAACTGTTCATTACCTTCTTCCTCATCAACCGTTTCAA GCAATAGTGTGAAACCCTAG
AA sequence Show only first row Show all	>Potri.011G073566.1 pacid=42782349 polypeptide=Potri.011G073566.1.p locus=Potri.011G073566 ID=Potri.011G073566.1.v4.1 annot-version=v4.1 MSNGILVLCAAGYRSFHINCGGQDVKNGKILYEGDQDSESNAAARSYYRLGSNWGFSSTGDFMDDNNFNDNKYTLQSNSNISLVDFGLYATARKTPLSIT YYGYCLENGNYTVRLHFAEIQFTDEKLYNKVARRVFDIYIQGIQVQKDFNFTEEAKGSNRNFTIAFNTTVTDRTLEIRLYWAGKGTTSIPRRGNYGPIIS AISVCSGYRTYCEEPEEASKKPIVIGVVTSAAFLILLVMGVIYWKLCYGDKYTRERELKGLDLKTGSFTLRQLKATPDNFNSENKIGEGGLGSVYKNLSD QTENGHFTSQNSHLKQSRFMDNCSLPSSSSTVSSNSVKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073566 [exp]	0	1
AT1G77990		SULTR2;2, AST56	SULPHATE TRANSPORTER 2;2, STAS...		Potri.002G092400 [exp]	1.73	0.9312	AST56.1
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Potri.004G033900 [exp]	7.74	0.8939
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020432 [exp]	11.18	0.8704
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G072841 [exp]	14.42	0.8554
AT3G63088		RTFL14, DVL14	DEVIL 14, ROTUNDIFOLIA like 14...		Potri.008G202000 [exp]	30.39	0.8221
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	33.31	0.8281
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073316 [exp]	48.63	0.8547
					Potri.011G015725 [exp]	54.49	0.8654
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014501 [exp]	74.60	0.8395
					Potri.008G169450 [exp]	82.84	0.8704

Compare expression of checked genes

Potri.011G073566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.