Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29740 227 / 2e-68 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 213 / 2e-63 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 199 / 2e-58 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 183 / 7e-53 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 182 / 2e-52 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G53420 164 / 4e-46 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 163 / 6e-46 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 158 / 3e-44 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 157 / 7e-44 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 126 / 4e-33 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G073041 [exp] 404 / 4e-145 AT1G29740 244 / 2e-74 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073166 [exp] 390 / 5e-133 AT1G29740 576 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073016 [exp] 384 / 2e-127 AT1G29740 775 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072591 [exp] 380 / 1e-125 AT1G29730 996 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072941 [exp] 379 / 2e-125 AT1G29720 947 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073241 [exp] 354 / 8e-116 AT1G29730 978 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073391 [exp] 304 / 6e-98 AT1G29730 893 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072991 [exp] 301 / 1e-97 AT1G29730 488 / 6e-160 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073491 [exp] 271 / 3e-91 AT1G29740 292 / 2e-90 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015239 [exp] 207 / 2e-61 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 166 / 4e-47 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 166 / 5e-47 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 162 / 2e-45 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10038153 [exp] 159 / 2e-44 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 157 / 6e-44 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 148 / 1e-40 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 131 / 8e-35 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020935 [exp] 108 / 1e-26 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 107 / 3e-26 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G073641.1 pacid=42781777 polypeptide=Potri.011G073641.1.p locus=Potri.011G073641 ID=Potri.011G073641.1.v4.1 annot-version=v4.1 ATGTGCAATTGCACCCTCAACCTCAATAATGATGGTTATTGTCATATCACGTCACTATATCTAAAAACGCTCAGTCTTCCAGGCGAGCTCCCGCCTGAAA TAACCAACCTTACATATCTTGAAATTCTTGACCTAACTCGCAACTACATTTCTGGCAATATTCCTGAGGAATGGGCTTCAATGAAACATTTGACAAACCT CTCACTTACATCCAATCGCTTGTCAGGAAATATTCCTCTGTACTTGGGAAGTTTTCGTAGCCTGACTTACTTGTCCCTTGAAGCAAATCAGTTTTCTGGT ACTATTCCTTCTCAGCTTGGTAATCTTGTCAACTTAACAGACCTGATACTTTCCTCCAATCAGTTGGAGGGAACCTTGCCAGAGACTCTCGCTAAGCTAA ACTTGACTAATTTTCGTGCGAGTGATAATAATCTTAGTGGCAGAATACCTGATTTCATTGGGAACTGGAATAATCTTGATAGACTTGAATTATACGCAAG TGGACTCCAAGGGCCCATACCTCCTGCCATTCTTTCTTTAGAGAAGTTGACAGACTTGAGGATCACTGATATGTATGGACCAGAGTTTAATTTAACCAGC ATCCCCCCCAGAGTGAAAAAATTGGTTTTGAGAAACATCAATTTAGCTGGAGTAATCCCAGGAGATGTGTGGACATCGGGTTCTCTGAAAACGCTGTAA
AA sequence Show only first row Show all	>Potri.011G073641.1 pacid=42781777 polypeptide=Potri.011G073641.1.p locus=Potri.011G073641 ID=Potri.011G073641.1.v4.1 annot-version=v4.1 MCNCTLNLNNDGYCHITSLYLKTLSLPGELPPEITNLTYLEILDLTRNYISGNIPEEWASMKHLTNLSLTSNRLSGNIPLYLGSFRSLTYLSLEANQFSG TIPSQLGNLVNLTDLILSSNQLEGTLPETLAKLNLTNFRASDNNLSGRIPDFIGNWNNLDRLELYASGLQGPIPPAILSLEKLTDLRITDMYGPEFNLTS IPPRVKKLVLRNINLAGVIPGDVWTSGSLKTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073641 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412700 [exp]	1.41	0.9376
					Potri.002G181501 [exp]	10.95	0.8454
					Potri.001G448600 [exp]	32.09	0.8161
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120400 [exp]	38.10	0.8127	ATRPABC16.1
					Potri.005G192466 [exp]	50.49	0.8405
					Potri.008G155600 [exp]	59.57	0.8533
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057250 [exp]	85.62	0.8089
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.003G027722 [exp]	91.01	0.8459
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.015G147800 [exp]	94.37	0.8122
					Potri.001G298350 [exp]	123.40	0.8206

Compare expression of checked genes

Potri.011G073641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.