Plant FIBer expression Database

Potri.011G073900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG01000 506 / 0 ATCG01000.1, YCF1.1 Ycf1 protein (.1)
ATCG01130 504 / 1e-165 ATCG01130.1, YCF1.2 Ycf1 protein (.1)
AT2G07739 287 / 9e-98 Ycf1 protein (.1)
ATMG00370 284 / 2e-96 ATMG00370.1, ORF199 Ycf1 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G008176
[exp]
145 / 2e-43 ATCG01000 111 / 1e-30 Ycf1 protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05758 Ycf1 Ycf1
Representative CDS sequence
>Potri.011G073900.2 pacid=42781349 polypeptide=Potri.011G073900.2.p locus=Potri.011G073900 ID=Potri.011G073900.2.v4.1 annot-version=v4.1
ATGATTTTGAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGGTAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCA
CATTCTCCATGGGACCCTTTTATCTCTTCCTTCTCCGAGCTCGGGTTATAGAAGAAGGAGAAGAAGGAACCGAGAAGAAGGTATCAGCAACAACAGGTTT
TATTACGGGGCAGCTCATGATGTTCATATCGATCTATTATGCACCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTATCCTAGCTCTACCGTAT
CTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAATTCAATGTGTAATCTTAGCATTCAATGTGTATTCC
TGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTATATGTTTCGATGCAACAACAAGAT
GTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAATTCT
CTTAGATCGAATAAGTACATTCGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTG
TCTACTCTTTAGGCAGAATACCGTCACCCATTTTTACTAAGAAACTGAAAGAAACCTCAGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATCC
TTCTTCTTCCCTCTTTTCAGAAGAAAAGGAGAATCCTGACAAAATTGACGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTC
CATTTTCACCCCAACTTCAAAAATGGTAACAACTTCTCAACTACAGATCATCCAATCTCCCATTACCTCTTTACTTCCTACAGTTTCAACAGCAGTAACC
GTTAA
AA sequence
>Potri.011G073900.2 pacid=42781349 polypeptide=Potri.011G073900.2.p locus=Potri.011G073900 ID=Potri.011G073900.2.v4.1 annot-version=v4.1
MILKSFILGNLVSLCMKVINSVVVVGLYYGFLTTFSMGPFYLFLLRARVIEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITILALPY
LLFHFFWNNHKHFFDYGSTTRNSMCNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNS
LRSNKYIRSNKYLVSELRNSMARIFSILLFITCVYSLGRIPSPIFTKKLKETSGTKQEQEGSTEEDPSSSLFSEEKENPDKIDETEEIRVNGKEKTKDEF
HFHPNFKNGNNFSTTDHPISHYLFTSYSFNSSNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG01000 ATCG01000.1, YC... Ycf1 protein (.1) Potri.011G073900
[exp]
0 1
ATCG01000 ATCG01000.1, YC... Ycf1 protein (.1) Potri.002G008176
[exp]
1.41 0.9505
ATCG01130 ATCG01130.1, YC... Ycf1 protein (.1) Potri.005G150450
[exp]
12.64 0.9241
ATCG01130 ATCG01130.1, YC... Ycf1 protein (.1) Potri.013G075166
[exp]
16.58 0.9238
AT2G25720 unknown protein Potri.004G068400
[exp]
17.83 0.8698
AT1G08640 CJD1 Chloroplast J-like domain 1 (.... Potri.019G018300
[exp]
18.22 0.8348
Potri.005G150475
[exp]
21.35 0.9219
ATCG00800 ATCG00800.1, RP... structural constituent of ribo... Potri.017G072340
[exp]
24.95 0.9223
ATCG01130 ATCG01130.1, YC... Ycf1 protein (.1) Potri.010G052900
[exp]
29.32 0.9136
Potri.012G074300
[exp]
33.91 0.8032
ATCG01300 ATCG01300.1, RP... ribosomal protein L23 (.1) Potri.013G138612
[exp]
34.08 0.9083

Potri.011G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.