Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG01310 376 / 2e-131 ATCG01310.1, RPL2.2 ribosomal protein L2 (.1) ATCG00830 376 / 2e-131 ATCG00830.1, RPL2.1 ribosomal protein L2 (.1) ATCG01300 122 / 2e-34 ATCG01300.1, RPL23.2 ribosomal protein L23 (.1) ATCG00840 122 / 2e-34 ATCG00840.1, RPL23.1 ribosomal protein L23.1 (.1) AT2G44065 61 / 7e-11 Ribosomal protein L2 family (.1.2) AT3G51190 49 / 2e-06 Ribosomal protein L2 family (.1) AT4G36130 47 / 5e-06 Ribosomal protein L2 family (.1) AT2G18020 47 / 9e-06 EMB2296 embryo defective 2296, Ribosomal protein L2 family (.1) ATCG00680 42 / 0.0004 ATCG00680.1, PSBB photosystem II reaction center protein B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G137077 [exp] 212 / 4e-69 ATCG01310 243 / 2e-82 ribosomal protein L2 (.1) Potri.013G136466 [exp] 198 / 9e-64 ATCG01310 253 / 2e-86 ribosomal protein L2 (.1) Potri.005G154300 [exp] 195 / 1e-62 ATCG01310 246 / 6e-84 ribosomal protein L2 (.1) Potri.013G138612 [exp] 136 / 3e-40 ATCG01300 176 / 2e-59 ribosomal protein L23 (.1) Potri.005G154350 [exp] 136 / 3e-40 ATCG01300 176 / 2e-59 ribosomal protein L23 (.1) Potri.017G007700 [exp] 66 / 2e-12 AT2G44065 200 / 3e-65 Ribosomal protein L2 family (.1.2) Potri.007G142200 [exp] 64 / 7e-12 AT2G44065 197 / 4e-64 Ribosomal protein L2 family (.1.2) Potri.011G113575 [exp] 47 / 2e-05 ATCG00680 933 / 0.0 photosystem II reaction center protein B (.1) Potri.011G074868 [exp] 45 / 4e-05 ATCG00680 926 / 0.0 photosystem II reaction center protein B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001687 [exp] 207 / 5e-66 ATCG00830 281 / 3e-96 ribosomal protein L2 (.1) Lus10001572 [exp] 62 / 5e-11 AT2G44065 238 / 8e-80 Ribosomal protein L2 family (.1.2) Lus10004973 [exp] 64 / 6e-11 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10041923 [exp] 45 / 4e-05 AT4G36130 502 / 0.0 Ribosomal protein L2 family (.1) Lus10028468 [exp] 45 / 4e-05 AT4G36130 495 / 4e-180 Ribosomal protein L2 family (.1) Lus10025966 [exp] 44 / 0.0001 AT4G36130 499 / 0.0 Ribosomal protein L2 family (.1) Lus10037433 [exp] 42 / 0.0004 AT2G07715 191 / 2e-57 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00181 [poplar] [flax] Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain CL0021 [poplar] [flax] PF00276 [poplar] [flax] Ribosomal_L23 Ribosomal protein L23 CL0107 [poplar] [flax] KOW PF03947 [poplar] [flax] Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G074401.1 pacid=42781878 polypeptide=Potri.011G074401.1.p locus=Potri.011G074401 ID=Potri.011G074401.1.v4.1 annot-version=v4.1 ATGGATGGAATCAAATATGCAGTAGTTACAGACAAAAGTATTCGGTTATTGTTGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAG AAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGCCATCGACTCCCGGGAAAGGGTAGAAGAATGAGACCTATTATCAT GAGGAATAGCCTCTCATCATATTGCAGCAGGGACATTGGGCATATTGGCGGGCCTATTCCATCTTACATGGCGATACATTTATACAAAACTTCTACCCTG AGCACACGCAATGGAGCCGTAGATAGTCAAGTGAAATCCAATACACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGCCGTAATTCCAGAG GAATCATTACCACAAGGCATAGAGGGGGAGGTCATAAACGTCTATACCATAAAATCGAGTTTCGACGGAATGAAAAATACATATATGGTAGAATCGTAAC CATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGGGCTATAATTGGAGATACCATTATTTCTGGTACAGAAGTTCCT ATAAAAATGGGAAATGCCCTACCTTTGAGCACGGCCATACATAACATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCTGCAGGTGTTGTAG CAAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTTCGTTTAATATCCAAAAACTGCTCAGCAACAGTCGGACAAGT AGGGAATGCTGGGGTGAACCAGAAAAGTTTGGGTAGAGTCGGATCTAAATGTTGGCTAGGTAAACGTCCTACCATCCCCATAGGGGGTGGTGAGGGGAGG GCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTC GTCGCCGCAGTAAATAG
AA sequence Show only first row Show all	>Potri.011G074401.1 pacid=42781878 polypeptide=Potri.011G074401.1.p locus=Potri.011G074401 ID=Potri.011G074401.1.v4.1 annot-version=v4.1 MDGIKYAVVTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIIMRNSLSSYCSRDIGHIGGPIPSYMAIHLYKTSTL STRNGAVDSQVKSNTRNNLIYGQHHCGKGRNSRGIITTRHRGGGHKRLYHKIEFRRNEKYIYGRIVTIEYDPNRNAYICLIHYGDGAIIGDTIISGTEVP IKMGNALPLSTAIHNIEITLGRGGQLARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRVGSKCWLGKRPTIPIGGGEGR APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	0	1
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G136466 [exp]	1.73	0.9993
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.005G154674 [exp]	2.82	0.9990
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.005G154300 [exp]	5.74	0.9970
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.013G137688 [exp]	6.48	0.9984
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Potri.004G131700 [exp]	7.93	0.9856	CYP710.1
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.011G074301 [exp]	8.00	0.9975
ATCG00750		ATCG00750.1, RP...	ribosomal protein S11 (.1)		Potri.010G032501 [exp]	8.83	0.9944
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G137077 [exp]	10.39	0.9947
AT3G25490			Protein kinase family protein ...		Potri.013G031501 [exp]	12.32	0.9718
ATCG01300		ATCG01300.1, RP...	ribosomal protein L23 (.1)		Potri.013G138612 [exp]	13.85	0.9824

Compare expression of checked genes

Potri.011G074401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.