Plant FIBer expression Database

Potri.011G074868 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00680 926 / 0 ATCG00680.1, PSBB photosystem II reaction center protein B (.1)
ATCG00280 54 / 1e-07 ATCG00280.1, PSBC photosystem II reaction center protein C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G113575
[exp]
941 / 0 ATCG00680 933 / 0.0 photosystem II reaction center protein B (.1)
Potri.017G140700
[exp]
592 / 0 ATCG00680 634 / 0.0 photosystem II reaction center protein B (.1)
Potri.002G178801
[exp]
66 / 5e-12 ATCG00670 191 / 6e-62 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1)
Potri.013G142760
[exp]
65 / 4e-11 ATCG00280 853 / 0.0 photosystem II reaction center protein C (.1)
Potri.011G074401
[exp]
42 / 0.0007 ATCG01310 376 / 2e-131 ribosomal protein L2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006594
[exp]
501 / 1e-177 ATCG00680 544 / 0.0 photosystem II reaction center protein B (.1)
Lus10006593
[exp]
341 / 1e-116 ATCG00680 352 / 1e-121 photosystem II reaction center protein B (.1)
Lus10001686
[exp]
116 / 1e-31 ATCG00680 117 / 4e-33 photosystem II reaction center protein B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00421 PSII Photosystem II protein
Representative CDS sequence
>Potri.011G074868.1 pacid=42780825 polypeptide=Potri.011G074868.1.p locus=Potri.011G074868 ID=Potri.011G074868.1.v4.1 annot-version=v4.1
ATGGGTTTGCCTTGGTATCATGTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGCTGGCTGTCCATATAATGCATACAGCTTTGGTTGCTGGTTGGG
CCGGCTCGATGGCTCTATATGAATTAGCAGTTTTTGATCCTTCTGACCCCGTTCTCGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGAC
TCGTTTAGGAATAACCAATTCATGGGGTGGTTGGAGTATTACAGGAGGAACTATAACGAATCCGGGTATTTGGAGTTATGAAGGTGTGGCTGGGGCGCAT
ATTGTGTTTTCTGGCTTGTGCTTCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATCTTTTGTGATGAACGTACAGGAAAACCTTCTTTAG
ATTTGCCCAAGATCTTTGGAATTCATTTATTTCTCTCAGGAGTGGCTTGTTTTGGGTTTGGTGCTTTTCATGTAACAGGATTGTATGGTCTTGGAATATG
GGTGTCTGATCCTTATGGGCTAACCGGAAAAGTACAATCTGTAAATCCAGCGTGGGGTGTGGAAGGTTTTGATCCTTTTGTTCTGGGAGGAATAACCTCT
CATCATATTGCAGCAGGGACATTGGGCATATTGGCGGGCCTATTCCATCTTAGTGTCCGCCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATA
TTGAAACCGTGCTTTCCAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCCATTGAATT
ATTTGGTCCCACTCGTTATCAATGGGATCAAGGATACTTCCAACAAGAAATATATCGAATAGTTGGTACTGGGCTGGCTGAAAATCAAAGCTTATCCGAA
GCTTGGTCTAAAATTCCTGAAAAATTAGCCTTTTATGATTACATCGGAAATAATCCGGCAAAGGGTGGATTGTTCAGAGCAGGTTCAATGGATAACGGGG
ATGGAATAGCTATTGGGTGGTTAGGACATCCTCTATTTAGAGATAAAGAAGGGCGTGAGCTTTGTGTACGTCGTATGCCTACTTTTTTTGAAACATTTTC
GGTTGTTTTGGTAGACGGAGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGGGTAGAATCGAAGTATAGTGTTGAACAAGTAGGTGTAACTGTTGAG
TTCTATGGTGGTGAACTAAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGCGCACAATTGGGTGAAATTTTTGAATTAGATC
GTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGTAGTCCAAAGGGTTGGTTTACTTTTGGACATGCTTCGTTTGCCCTGCTCTTCTTCTTTAGACACAT
TTGGCATGGCTCTCGAACCTTGTTCAGAGATGTTTTTGCTGATATTGATCCAGATTTAGACGCTCAGGTGGAATTTGGAGCATTCCAAAAACTTGGAGAT
CCAACTACAAGAAGACAAGTAGTTTGA
AA sequence
>Potri.011G074868.1 pacid=42780825 polypeptide=Potri.011G074868.1.p locus=Potri.011G074868 ID=Potri.011G074868.1.v4.1 annot-version=v4.1
MGLPWYHVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
IVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGLGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVLGGITS
HHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRIVGTGLAENQSLSE
AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAIGWLGHPLFRDKEGRELCVRRMPTFFETFSVVLVDGDGIVRADVPFRRVESKYSVEQVGVTVE
FYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPKGWFTFGHASFALLFFFRHIWHGSRTLFRDVFADIDPDLDAQVEFGAFQKLGD
PTTRRQVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.011G074868
[exp]
0 1
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.011G113575
[exp]
3.46 0.9944
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.011G074784
[exp]
7.34 0.8632
ATCG00330 ATCG00330.1, RP... chloroplast ribosomal protein ... Potri.013G142336
[exp]
8.36 0.8852
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.013G141912
[exp]
9.79 0.9027
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.019G028351
[exp]
10.19 0.8879
ATCG00340 ATCG00340.1, PS... Photosystem I, PsaA/PsaB prote... Potri.013G142124
[exp]
10.48 0.8989
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.011G113800
[exp]
10.95 0.8811
ATCG00020 ATCG00020.1, PS... photosystem II reaction center... Potri.005G154836
[exp]
23.36 0.8077
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.004G128501
[exp]
28.91 0.8285
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.011G113700
[exp]
33.94 0.7934

Potri.011G074868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.