Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00900 81 / 7e-22 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 81 / 7e-22 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G138900 [exp] 83 / 1e-22 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.004G140500 [exp] 64 / 7e-15 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027894 [exp] 69 / 2e-16 ATCG00900 167 / 7e-53 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10002394 [exp] 68 / 3e-16 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10000168 [exp] 47 / 3e-09 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10002395 [exp] 47 / 3e-09 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00177 [poplar] [flax] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Potri.011G075200.2 pacid=42781024 polypeptide=Potri.011G075200.2.p locus=Potri.011G075200 ID=Potri.011G075200.2.v4.1 annot-version=v4.1 ATGATTTTCAAATTAAGTTCCGAATTGGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATA GAGCTTTTGCACATTTTCGTTAA
AA sequence Show only first row Show all	>Potri.011G075200.2 pacid=42781024 polypeptide=Potri.011G075200.2.p locus=Potri.011G075200 ID=Potri.011G075200.2.v4.1 annot-version=v4.1 MIFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.011G075200 [exp]	0	1
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.013G138900 [exp]	1.00	0.9979
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.011G084201 [exp]	3.87	0.9928
ATCG00800		ATCG00800.1, RP...	structural constituent of ribo...		Potri.012G047500 [exp]	9.00	0.9856
					Potri.007G062102 [exp]	11.87	0.9591
ATCG00800		ATCG00800.1, RP...	structural constituent of ribo...		Potri.002G235600 [exp]	12.48	0.9832
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.008G208700 [exp]	17.23	0.9700
ATCG00750		ATCG00750.1, RP...	ribosomal protein S11 (.1)		Potri.010G032501 [exp]	18.38	0.9831
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027580 [exp]	19.97	0.9545
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	20.49	0.9809
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G137077 [exp]	21.44	0.9791

Compare expression of checked genes

Potri.011G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.