Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29690 890 / 0 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT4G24290 442 / 4e-149 MAC/Perforin domain-containing protein (.1.2) AT1G28380 406 / 5e-135 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 394 / 5e-130 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064000 [exp] 1092 / 0 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.016G135100 [exp] 729 / 0 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 711 / 0 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 461 / 1e-156 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 437 / 2e-147 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.001G305600 [exp] 427 / 2e-143 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.010G104600 [exp] 426 / 1e-142 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.019G001000 [exp] 425 / 1e-142 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.004G047700 [exp] 413 / 1e-137 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029279 [exp] 959 / 0 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 940 / 0 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 611 / 0 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 444 / 1e-149 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 429 / 9e-144 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 424 / 8e-142 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 400 / 1e-132 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10037363 [exp] 394 / 2e-130 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10041285 [exp] 391 / 4e-129 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 389 / 6e-128 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF01823 [poplar] [flax] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Potri.011G075500.1 pacid=42782444 polypeptide=Potri.011G075500.1.p locus=Potri.011G075500 ID=Potri.011G075500.1.v4.1 annot-version=v4.1 ATGAACCAACCAAGCAAGCACGCCAGAACAAATATTTCTCGTTTGATGGAAAAAAAGATGAGCTTGAGTTCTGATGCCTTGACTACCACTCTCTGCAACT CGATTCAAGCTTTGGGTCGTGGCTTTGATGTTACATCTGATATAAGGCTTTTATATTGTAAAGGAGCTACTGGGTCCAGGTTGGTTCATATTGATGAAGA ACATGCTAGGGATCTTGATATCTCTCACGGGCTTGTGCTGCCTAGTCTTTCTTTTGACATCGACTGCTCTCAAGAGAAAAGAAGCTTTGAGAGAATTCCT GTTTGCTCCTTCCATGAGATGGCAGGACTATTCAATGAAAAGTCAGGTATATCAGAACGAATTCCTCTCGGAAGCTTTAATGGCATGTTCAACTTCACTG GCTCATGGCAAGTTGACGCAGCTGGAACAAAATCCCTTGCAATGGTTGGGCATTTCATTCCCTTGTATAAGGTTCAGATAGCCAAAGTAAACCTAGTTTT GCGTGAGGAAGTCAAGCGTGCTGTTCCTTACTCATGGGATCCTGCATCCCTGGCGAGCTTCATTGAAAGCTATGGTACCCATATTGTCACCTCTGCAACA ATTGGTGGACGAGATGTTGTTTATATCAGGCAGCACCAGGCATCTCCTTTGTCAGCATCTGATATCGAGAACTACGTGAAAGACATAGCAGATCAGAGGT TTCAAGACTCAAAAAATACATCAATTGCTGCCCCCTTGAAATATAAGGACAAGGACGTAACAGTGATTTTTAGAAGGAGAGGAGGTGACGATCTTGAACA GAGTCATGCCAAGTGGGCAGAGACAGTGCAGTTGGCACCAGATGTGATTAACATGACGTTTACACCTATTGTGTCTCTGCTTGAAGGAGTGCCTGGAATA AAGCATTTGGCCCGGGCAATTGAGTTATACTTGGAATACAAGCCACCCATAGAGGATTTGCAGTATTTCTTGGATTTTCAAATTGCTAAAGGATGGGCGC CAGAGCAGAATAATCTTCTAAGAAAGGAGCCTGTTTGTCAATCTCTTCAGTTCAGTTTGATGGGTCCCAAGCTGTATATAAGCCCAGACCAGGTAACAGT TGGCCGTAAGCCAGTTACAGGTCTCAGACTTAGCCTAGAGGGCAGCAAGCAAAACAGACTTTCCATCCATTTGGAGCATCTAGTGTTCCTTCCGAAAGTC CTTCAACCCCACTGGGATGCACATGTGGCCATAGGTGCTCCCAAGTGGCAAGGTCCTGAGGAGCAAGACAGCCGTTGGTTTGAGCCTATCAAGTGGAAGA ACTTTTCCCATGTAAGCACCGCACCGATAGAGTATGCTGACACTTCCATCGGAGACCTATCTGGTGTTCACATTGTGACCGGGGCTCAGCTTGGTGTTTG GGATTTTGGTGCGAAAAATGTGTTACACCTAAAACTCCTATTCTCAAAAGTTCCAGGCTGTACATTAAGGAGGTCTGTATGGGACCATAGCCCCTCCAAC CCTTCTTCGCAGAGAAGCAATGGTGCATCCTCTTCTGTTTCACATGAGAAACCCTCCAGTGATAAGAAAGAAGATAGCCATGCTGGCAAATTGGCAAAAA TCGTCGACATGAGCGAAATGTCAAAGGGACCGCAAGATGTTCCAGGTCATTGGTTGGTAACAGGAGCTAAGCTTGGGGTTGATAAAGGAAAGATTGTTTT GCGAGTCAAGTACTCGTTATTGAATTACTGA
AA sequence Show only first row Show all	>Potri.011G075500.1 pacid=42782444 polypeptide=Potri.011G075500.1.p locus=Potri.011G075500 ID=Potri.011G075500.1.v4.1 annot-version=v4.1 MNQPSKHARTNISRLMEKKMSLSSDALTTTLCNSIQALGRGFDVTSDIRLLYCKGATGSRLVHIDEEHARDLDISHGLVLPSLSFDIDCSQEKRSFERIP VCSFHEMAGLFNEKSGISERIPLGSFNGMFNFTGSWQVDAAGTKSLAMVGHFIPLYKVQIAKVNLVLREEVKRAVPYSWDPASLASFIESYGTHIVTSAT IGGRDVVYIRQHQASPLSASDIENYVKDIADQRFQDSKNTSIAAPLKYKDKDVTVIFRRRGGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGI KHLARAIELYLEYKPPIEDLQYFLDFQIAKGWAPEQNNLLRKEPVCQSLQFSLMGPKLYISPDQVTVGRKPVTGLRLSLEGSKQNRLSIHLEHLVFLPKV LQPHWDAHVAIGAPKWQGPEEQDSRWFEPIKWKNFSHVSTAPIEYADTSIGDLSGVHIVTGAQLGVWDFGAKNVLHLKLLFSKVPGCTLRRSVWDHSPSN PSSQRSNGASSSVSHEKPSSDKKEDSHAGKLAKIVDMSEMSKGPQDVPGHWLVTGAKLGVDKGKIVLRVKYSLLNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	0	1
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	1.00	0.8112
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	3.00	0.7980
AT1G29690		CAD1	constitutively activated cell ...		Potri.004G064000 [exp]	3.46	0.7770
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	4.24	0.8015	Pt-ACA1.1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	8.06	0.7767
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	8.12	0.7646
AT4G12010			Disease resistance protein (TI...		Potri.017G103101 [exp]	9.38	0.7446
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.002G216800 [exp]	11.40	0.7398	Pt-RPM1.1
AT5G50180			Protein kinase superfamily pro...		Potri.001G343900 [exp]	12.72	0.7068
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	13.07	0.7436

Compare expression of checked genes

Potri.011G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.