Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18930 234 / 3e-79 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT4G18940 176 / 3e-56 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062400 [exp] 245 / 1e-83 AT4G18930 201 / 2e-66 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.001G324500 [exp] 220 / 1e-73 AT4G18930 178 / 2e-57 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029278 [exp] 237 / 2e-80 AT4G18930 178 / 3e-57 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10002767 [exp] 229 / 4e-77 AT4G18930 172 / 4e-55 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10002766 [exp] 213 / 5e-71 AT4G18930 146 / 4e-45 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [poplar] [flax] 2H PF07823 [poplar] [flax] CPDase Cyclic phosphodiesterase-like protein
Representative CDS sequence Show only first row Show all	>Potri.011G075600.2 pacid=42780274 polypeptide=Potri.011G075600.2.p locus=Potri.011G075600 ID=Potri.011G075600.2.v4.1 annot-version=v4.1 ATGGAAATCCCCCAAGGAACATCAACGCCTGCTGACAAAAAGCACGTTTATTCGGTGTGGGCATTTCCACCAGAAGATGTGGGGGCCAGGCTGAAGAGGT TGATGGCCGGACTCGCATCAGAGTTTGGTGGGCCCCAGTTCGAGCCACACATTACGGTTGTGGGGGCCATTGGTTTAACGGAGCAAGATGCGTTGGAGAA GTTTCATTCTGCTTGTGATGGGCTGCAGGCATATACTGCTACTGTTGATCGTGTGGCTACGGGGACTTTCTTTTATCAGTGTGTTTATTTGCTACTTCAT CCATTGCCTGAGGTGGTGGAAGCTAGTGCACATTGTAGTGGACATTTTGGGTACAAGAGTTCTACTCCTTACATGCCCCATCTCAGTCTCCTTTATGGTG ATCTGACGGATGATGAGAAGAAAGAGGCTCAAGAAAAAGCTAATATTCTTGATGAGAGCATCAGCGGTCTAAGCTTTCCAATAACTCGCCTTGCATTGTG GAAAACAGATACTCAGGACTTGACTCTGAAATCATGGGAGAAGATTGCCGAATGCAGCCTCAGCCCAAAATAA
AA sequence Show only first row Show all	>Potri.011G075600.2 pacid=42780274 polypeptide=Potri.011G075600.2.p locus=Potri.011G075600 ID=Potri.011G075600.2.v4.1 annot-version=v4.1 MEIPQGTSTPADKKHVYSVWAFPPEDVGARLKRLMAGLASEFGGPQFEPHITVVGAIGLTEQDALEKFHSACDGLQAYTATVDRVATGTFFYQCVYLLLH PLPEVVEASAHCSGHFGYKSSTPYMPHLSLLYGDLTDDEKKEAQEKANILDESISGLSFPITRLALWKTDTQDLTLKSWEKIAECSLSPK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.011G075600 [exp]	0	1
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.011G047800 [exp]	7.14	0.7562	DTA4.2
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.018G113000 [exp]	8.12	0.7749
AT2G33845			Nucleic acid-binding, OB-fold-...		Potri.011G114800 [exp]	12.12	0.7314
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	16.97	0.7428
AT3G45070			P-loop containing nucleoside t...		Potri.017G100400 [exp]	18.49	0.7701
AT2G28790			Pathogenesis-related thaumatin...		Potri.009G028800 [exp]	20.00	0.7283
AT3G24110			Calcium-binding EF-hand family...		Potri.001G314900 [exp]	24.12	0.6374
AT1G26520			Cobalamin biosynthesis CobW-li...		Potri.008G094100 [exp]	35.94	0.6450
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	36.78	0.7052
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	44.39	0.6776

Compare expression of checked genes

Potri.011G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.