Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AG1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18960 324 / 7e-113 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 268 / 6e-91 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 259 / 1e-87 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 259 / 1e-87 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G57230 153 / 7e-46 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G45650 153 / 1e-45 MADS AGL6 AGAMOUS-like 6 (.1) AT4G22950 143 / 3e-42 MADS AGL19 AGAMOUS-like 19 (.1) AT5G62165 141 / 1e-41 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT2G45660 140 / 2e-41 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G60910 141 / 3e-41 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064300 [exp] 405 / 4e-145 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 253 / 1e-85 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 228 / 1e-75 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.015G134800 [exp] 156 / 9e-47 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.014G074100 [exp] 149 / 2e-44 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 147 / 1e-43 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.002G151700 [exp] 145 / 2e-43 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.003G169600 [exp] 146 / 3e-43 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.002G109601 [exp] 144 / 1e-42 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005302 [exp] 261 / 4e-88 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 259 / 6e-87 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 221 / 9e-72 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10007324 [exp] 192 / 2e-61 AT4G18960 211 / 7e-69 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Lus10034663 [exp] 145 / 2e-42 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10006715 [exp] 140 / 7e-41 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10015765 [exp] 140 / 9e-41 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10002763 [exp] 134 / 2e-40 AT4G18960 133 / 3e-40 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Lus10037040 [exp] 139 / 5e-40 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003124 [exp] 137 / 2e-39 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.011G075800.2 pacid=42780705 polypeptide=Potri.011G075800.2.p locus=Potri.011G075800 ID=Potri.011G075800.2.v4.1 annot-version=v4.1 ATGGCATACCAAAATGAACCCCAAGAGAGCTCTCCCCTGAGGAAGCTGGGGAGGGGAAAGGTGGAGATCAAGCGGATCGAGAACACCACCAATCGCCAAG TCACTTTCTGCAAAAGGCGGAATGGTTTGCTCAAGAAAGCCTATGAATTATCTGTTCTTTGCGATGCTGAGGTTGCACTCATCGTCTTCTCCAGCCGTGG ACGCCTTTATGAGTACTCTAACAATAGTGTCAAATCTACAATTGAAAGGTACAAAAAGGCATGTGCAGATTCTTCCAACAACGGGTCAGTTTCTGAAGCC AATGCTCAGTTCTATCAGCAAGAAGCTGCCAAGCTGCGCTCGCAAATTGGTAATTTGCAGAATTCAAACAGGAATATGCTGGGTGAATCACTTAGTGCAT TGAGTGTGAAGGAACTTAAGAGCTTGGAGATAAAACTTGAGAAAGGAATTGGTAGAATTCGTTCGAAAAAGAATGAGCTGTTGTTTGCTGAAATTGAGTA TATGCAGAAGAGGGAGATTGACTTGCACAACAATAACCAGCTTCTCCGAGCAAAGATTGCAGAGAATGAAAGAAAGCGACAGCACATGAATTTGATGCCG GGAGGTGTCAACTTCGAGATCATGCAGTCTCAACCATTTGACTCTCGGAACTATTCTCAAGTTAATGGATTGCCGCCTGCCAATCATTACCCTCATGAAG ACCAGCTCTTCAGTTAG
AA sequence Show only first row Show all	>Potri.011G075800.2 pacid=42780705 polypeptide=Potri.011G075800.2.p locus=Potri.011G075800 ID=Potri.011G075800.2.v4.1 annot-version=v4.1 MAYQNEPQESSPLRKLGRGKVEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKSTIERYKKACADSSNNGSVSEA NAQFYQQEAAKLRSQIGNLQNSNRNMLGESLSALSVKELKSLEIKLEKGIGRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAENERKRQHMNLMP GGVNFEIMQSQPFDSRNYSQVNGLPPANHYPHEDQLFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	0	1	AG1.1
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	1.00	0.9847
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.010G046400 [exp]	1.41	0.9790
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G123300 [exp]	2.82	0.9644
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	3.16	0.9598
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	3.87	0.9676
AT1G19260			TTF-type zinc finger protein w...		Potri.014G176150 [exp]	4.24	0.9592
AT1G54740			Protein of unknown function (D...		Potri.005G037600 [exp]	6.92	0.9501
AT3G52105			unknown protein		Potri.006G054200 [exp]	7.21	0.9389
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G122650 [exp]	7.48	0.9515
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062600 [exp]	8.48	0.9544

Compare expression of checked genes

Potri.011G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.