Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29660 318 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 310 / 3e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 298 / 1e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 296 / 7e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19010 293 / 9e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 267 / 3e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 254 / 1e-82 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 252 / 1e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 248 / 8e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 236 / 3e-75 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008100 [exp] 334 / 1e-113 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 323 / 3e-109 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 322 / 1e-108 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 320 / 6e-108 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 317 / 1e-107 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 317 / 7e-107 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 316 / 1e-106 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 316 / 1e-106 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 315 / 2e-106 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011997 [exp] 311 / 2e-104 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 309 / 9e-104 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 308 / 2e-103 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 307 / 3e-103 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 298 / 2e-99 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 298 / 3e-99 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 295 / 3e-98 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011999 [exp] 292 / 5e-97 AT5G45670 328 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 290 / 1e-96 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 290 / 3e-96 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.011G075900.1 pacid=42780491 polypeptide=Potri.011G075900.1.p locus=Potri.011G075900 ID=Potri.011G075900.1.v4.1 annot-version=v4.1 ATGGCTAGTGTGAATATATTATATCTACTTGCATTTGTTCTGGTGATTGTTTTGAAATCGAGACATGATGTTGATGGAAAATCAGAAGTGCCTTGTTTTT TCATTTTTGGAGATTCATTGGTTGATAGTGGCAACAATAACCATCTTAAGAATAAGGGAAAAGTGAACTATCTACCATATGGGATTGACTTTCCCGATGG TCCAACGGGAAGGTTTAATAATGGTCGAACTGTGCCTGATGTGCTTGGTGAACTCTTGGGTTTCAAGAGTTTCATTAAATCTTTTCCAACAGCAAAAGGC TCACAAATCCTTGAAGGTGTTAACTATGGATCTGGCTACGCTGGAATTCGAGATGAAACAGGAAGACATATGGGCGTTCTTGTTTCTTTCAACAAGCAAA TAGAACATCACCAAGTTACCATGTCTCGCATTCATCATATACTAGGAAAAAACCATTCAAACTACCTAAAACAGTGCTTATATTTATCGATGATTGGCAA TAATGATTACATTAATAACTATTTTCTACCAAAGTATTACAATTCAAGACGTCATTATACCCCAAAACAATATGCTAATGTTCTTGTTGAAGAATATGCT CAGCACCTAAAGACTCTCCATGATTTTGGAGCAAGAAAGTTGGCTATAATTGGAGTTGCACCAATAGGTTGCACCCCAAACGCCACTGCTTACTATGGCA CAAACGGCTCTCTCTGCGTGGAAAAACTAAACAAAGCAGCAATTCTTTTCAATCAACTTCTTAAATTGCGTGTCCAAGATTTAAATAACAAACTAATTGG CGCAAACTTTATCTATTTGGAGATTTATGAAATTATATGGAAATACATCAACGTTCTAGGTACAAGAGGTTTAATCAAGAGTTGTTGTCAAGTGAACGAT TATGGTTTATGTATTCCTTCCAAACTTCCATGCCTAAATAGGAATTTGGCATTGTTTTGGGATTCCTTTCATCCTTCCGAGTTCTTGAACTTAATCACTG GAACAATTTCATACAATGCTTTGCGGACAATACTATAA
AA sequence Show only first row Show all	>Potri.011G075900.1 pacid=42780491 polypeptide=Potri.011G075900.1.p locus=Potri.011G075900 ID=Potri.011G075900.1.v4.1 annot-version=v4.1 MASVNILYLLAFVLVIVLKSRHDVDGKSEVPCFFIFGDSLVDSGNNNHLKNKGKVNYLPYGIDFPDGPTGRFNNGRTVPDVLGELLGFKSFIKSFPTAKG SQILEGVNYGSGYAGIRDETGRHMGVLVSFNKQIEHHQVTMSRIHHILGKNHSNYLKQCLYLSMIGNNDYINNYFLPKYYNSRRHYTPKQYANVLVEEYA QHLKTLHDFGARKLAIIGVAPIGCTPNATAYYGTNGSLCVEKLNKAAILFNQLLKLRVQDLNNKLIGANFIYLEIYEIIWKYINVLGTRGLIKSCCQVND YGLCIPSKLPCLNRNLALFWDSFHPSEFLNLITGTISYNALRTIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.011G075900 [exp]	0	1
					Potri.001G466132 [exp]	1.00	0.9990
					Potri.007G077350 [exp]	21.90	0.8906
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Potri.001G058400 [exp]	24.37	0.9431
					Potri.006G279850 [exp]	32.00	0.8756
					Potri.010G137500 [exp]	33.91	0.9001
AT5G27660			Trypsin family protein with PD...		Potri.018G001500 [exp]	38.43	0.9285
					Potri.001G031200 [exp]	46.86	0.8878
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	47.69	0.9901
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G236951 [exp]	54.03	0.8246
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.010G011200 [exp]	64.80	0.9901

Compare expression of checked genes

Potri.011G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.