Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45650 970 / 0 subtilase family protein (.1) AT5G45640 751 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT2G04160 610 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 591 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 583 / 0 ARA12 Subtilase family protein (.1) AT4G34980 530 / 4e-178 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 517 / 2e-173 Subtilase family protein (.1) AT3G14240 517 / 3e-173 Subtilase family protein (.1) AT3G14067 509 / 4e-170 Subtilase family protein (.1) AT4G10550 506 / 6e-169 Subtilase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468800 [exp] 626 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 608 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 607 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 580 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.006G001600 [exp] 573 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 565 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.011G050300 [exp] 564 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.009G133400 [exp] 561 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.011G050100 [exp] 558 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007083 [exp] 1045 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 1030 / 0 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10002780 [exp] 954 / 0 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10026062 [exp] 911 / 0 AT5G45650 857 / 0.0 subtilase family protein (.1) Lus10016064 [exp] 595 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 581 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 577 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 575 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 573 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 553 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.011G076700.1 pacid=42782274 polypeptide=Potri.011G076700.1.p locus=Potri.011G076700 ID=Potri.011G076700.1.v4.1 annot-version=v4.1 ATGAAGAAACTTTCTATCCTCTTTCTGTTTCTTCTTCCTCTCTTAGCCTCATGCGAGGAGAAGCAGGTCTACATAGTGTACTTTGGAGAGCATAAAGGAG ACAAAGCATTGCATGAAATAGAAGAATTTCATCAGTCATATTTGTATGGAGTGAAACAAACTGAAGAAGAAGCTACAGCCTCTCTTCTTTACAGCTATAA GCACAGCATCAATGGCTTCGCAGCATTGCTAAACCCAGATGAAGCGTCCAAGCTATCAGAGTTGAAAGAGGTGGTGTCAGTCTTTAAAAGCAACCCAAGA AAGTACTCGGTGCAAACAACAAGATCATGGAGATTTGCAGGCTTGGAAGAAGAGGGACATAACGTAAATCATGGCTTCGGCGGGGGCAGAGACCTACTAA AGAGAGCAGGATATGGAAAACAAGTCATAGTTGGGCTCTTAGATAGTGGTGTGTGGCCAGAATCACTAAGCTTCAGGGATGAAGGGATGGGACCCATCCC AAAATCATGGAAGGGAATCTGCCAAAATGGACCTGATTTTAACTCATCCCACTGTAACAAGAAAATTATTGGAGCTCGATACTACATCAAGGGTTTTGAA AACTACTATGGACCACTGAATAGGACAGAGGACTCCAGGTCACCACGAGACAAGGACGGCCATGGGACTCATACAGCATCCACCGCTGTTGGAAGCCGGG TCAAAAATGCAGCAGCTTTGGGCGGCTTCGCTCGTGGAACTGCCACGGGTGGGGCTCCGTTAGCTCACCTGGCAATATACAAGGTTTGTTGGGCGATCCC GAACCAAGAAAAGGCTGATGGCAACACATGTTTCGAGGAAGATATGCTTGCAGCTATTGATGATGCCATTGGTGATGGAGTCCATATTATGAGCATCTCC ATTGGCACCCGAGAACCCACTCCTCTCAAAGAAGATGGTATTGCTATTGGTGCATTCCATGCTTTGAAAAAAAACATTGTGGTGGCGTGTGCTGCAGGGA ATGAAGGCCCTGCCCCATCTACATTGTCAAATCCAAGTCCTTGGATTATCACAGTAGGTGCTAGCGGCGTGGACCGTGCATTTTTTGGACCCCTTGTGCT AGGAAATGGGATGAAAATTGAGGGACAAACTGTTACTCCTTACAAGCTGGACAAAGATTGCCCATTAGTGTTTGCAGCAGACGCAGTTGCCTCCAATGTC CCCGAGAATGTAACAAGCCAATGCCTTCCCAATTCTCTTTCACCTAGAAAGGTCAAAGGAAAAATAGTACTGTGCATGAGAGGGTCTGGAATGAGAGTTG CCAAAGGAATGGAGGTGAAAAGGGCTGGAGGTTTTGGTTTCATCTTAGGAAATAGCCAAGCAAATGGGAATGATGTAATTGTGGATGCGCATGTTCTTCC AGCAACTTCAGTAGGCTACAATGATGCCATGAAAATTCTCAACTACATCCGCTCCACCAAGAATCCAATGGCTAGAATTGGGATAGCAAGGACAATTTTA CAGTATAGACCAGCACCAGTCATGGCTTCATTTACCAGTAGAGGTCCAAATGTGATTCATCCTTCCATTCTCAAGCCGGACATAACAGCTCCGGGAGTAA ACATATTGGCCGCATGGAGTGGAGCAACAGCCCCATCAAAGTTGTATGAAGACAAGCGATTGGTTAGGTATAACATTATTTCTGGAACTTCTATGGCTTG TCCTCATGTAGCTGCTGCTGCAGCACTTCTCAGAGCAATACACCCTGAATGGAGCAGTGCTGCTATAAGATCTGCCCTCATGACCACCGCCTGGATGAAG AACAACATGGGTCAGCCCATAGCCGATCAATCTGGCAATGCCGCGACTCCATTCCAATTTGGTTCAGGGCACTTCCGTCCAGCAAAGGCAGCAGATCCTG GTCTAGTATATGATGCATCTTATACGGATTACCTGCTCTATCTTTGCAGCTATGGAGTCAAAAACGTTTACCCCAAATTCAAGTGCCCAGCAGTATCACC GTCAATATACAACTTCAACTATCCATCAGTGTCACTTCCTAAGCTCAATGGCACTCTAAACATTACAAGGACTGTCACAAACGTTGGTGCTAGCAGTAGT GTCTACTTCTTTAGTGCCAGGCCACCTTTGGGATTCGCTGTTAAAGCGTCGCCGAGTGTTTTGTTTTTTAATCATGTAGGGCAGAAGAAAAGCTTCATCA TAACAATAAAAGCTAGGGAAGATTCCATGTCAAATGGCCACAACAAGGGTGAGTATGCCTTTGGCTGGTACACTTGGTCTAATGGTCACCATTATGTAAG AAGCCCTATGGCAGTATCTTTAGCATAG
AA sequence Show only first row Show all	>Potri.011G076700.1 pacid=42782274 polypeptide=Potri.011G076700.1.p locus=Potri.011G076700 ID=Potri.011G076700.1.v4.1 annot-version=v4.1 MKKLSILFLFLLPLLASCEEKQVYIVYFGEHKGDKALHEIEEFHQSYLYGVKQTEEEATASLLYSYKHSINGFAALLNPDEASKLSELKEVVSVFKSNPR KYSVQTTRSWRFAGLEEEGHNVNHGFGGGRDLLKRAGYGKQVIVGLLDSGVWPESLSFRDEGMGPIPKSWKGICQNGPDFNSSHCNKKIIGARYYIKGFE NYYGPLNRTEDSRSPRDKDGHGTHTASTAVGSRVKNAAALGGFARGTATGGAPLAHLAIYKVCWAIPNQEKADGNTCFEEDMLAAIDDAIGDGVHIMSIS IGTREPTPLKEDGIAIGAFHALKKNIVVACAAGNEGPAPSTLSNPSPWIITVGASGVDRAFFGPLVLGNGMKIEGQTVTPYKLDKDCPLVFAADAVASNV PENVTSQCLPNSLSPRKVKGKIVLCMRGSGMRVAKGMEVKRAGGFGFILGNSQANGNDVIVDAHVLPATSVGYNDAMKILNYIRSTKNPMARIGIARTIL QYRPAPVMASFTSRGPNVIHPSILKPDITAPGVNILAAWSGATAPSKLYEDKRLVRYNIISGTSMACPHVAAAAALLRAIHPEWSSAAIRSALMTTAWMK NNMGQPIADQSGNAATPFQFGSGHFRPAKAADPGLVYDASYTDYLLYLCSYGVKNVYPKFKCPAVSPSIYNFNYPSVSLPKLNGTLNITRTVTNVGASSS VYFFSARPPLGFAVKASPSVLFFNHVGQKKSFIITIKAREDSMSNGHNKGEYAFGWYTWSNGHHYVRSPMAVSLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45650			subtilase family protein (.1)		Potri.011G076700 [exp]	0	1
AT5G66600			Protein of unknown function, D...		Potri.005G130000 [exp]	15.90	0.7971
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.018G049401 [exp]	18.38	0.8111
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	19.67	0.8206
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.011G154500 [exp]	24.10	0.7609
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.018G049600 [exp]	25.49	0.7776
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Potri.015G134700 [exp]	29.46	0.7431
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Potri.004G079200 [exp]	30.98	0.8112	Pt-FRO2.2
AT3G48200			unknown protein		Potri.015G079000 [exp]	33.70	0.8190
AT5G02110		CYCD7;1	CYCLIN D7;1 (.1)		Potri.006G088300 [exp]	40.24	0.8124
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.005G138400 [exp]	48.71	0.8000	Pt-ZEAEPOX.2

Compare expression of checked genes

Potri.011G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.