Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29630 751 / 0 5'-3' exonuclease family protein (.1.2.3) AT1G18090 311 / 6e-97 5'-3' exonuclease family protein (.1.2) AT5G26680 80 / 1e-15 5'-3' exonuclease family protein (.1.2) AT3G28030 66 / 8e-11 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT2G02550 56 / 3e-09 PIN domain-like family protein (.1.2) AT3G48900 47 / 5e-05 single-stranded DNA endonuclease family protein (.1.2) AT1G01880 47 / 7e-05 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041400 [exp] 309 / 7e-96 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.013G000700 [exp] 79 / 3e-15 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 67 / 3e-11 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.015G142800 [exp] 46 / 0.0001 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.014G077300 [exp] 44 / 0.0004 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002782 [exp] 746 / 0 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10011991 [exp] 746 / 0 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 496 / 1e-170 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10027250 [exp] 293 / 6e-90 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10038958 [exp] 176 / 8e-49 AT1G18090 315 / 5e-103 5'-3' exonuclease family protein (.1.2) Lus10000270 [exp] 74 / 7e-14 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 65 / 2e-10 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10041375 [exp] 52 / 2e-06 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10027451 [exp] 49 / 9e-06 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10005744 [exp] 49 / 2e-05 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF00752 [poplar] [flax] XPG_N XPG N-terminal domain CL0464 [poplar] [flax] 5_3_exonuc_C PF00867 [poplar] [flax] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Potri.011G077001.1 pacid=42781905 polypeptide=Potri.011G077001.1.p locus=Potri.011G077001 ID=Potri.011G077001.1.v4.1 annot-version=v4.1 ATGGGAATACAAGGGCTTTTACCTCTCTTGAAATCAATAATGGTACCAATCCATATTAAGGAATTAGAGGGCTGTTCTGTTGCGGTTGATACCTATTCTT GGCTTCACAAAGGTGCCTTGTCTTGCAGCACTCAGCTTTGCAAAGGATTACCCACTTCCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGCTGCG GCATTATGGTGTTAAGCCAATTTTAGTCTTTGATGGAGGTCTTCTGCCAATGAAGATTGAACAAGAGAACAAACGTGCAAGGACAAGGAAAGAGAACCTT GTGCGTGCTATTGAGCATGAGTCAAATGGAAATTCTGCAGCTGCTTATGAGTGCTATCAGAAGGCTGTTGATATTTCCCCTTCAATTGCGCACGAACTAA TCCAGGTCTTAAGGCAGGAGAATGTATCATATGTTGTGGCCCCTTATGAGGCAGATGCCCAAATGACCTTCTTGTCGGTATGCAAACAAGTGGATGCAGT TATCACCGAGGACTCTGATCTAATACCTTTTGGCTGTCACCGAATTATTTTCAAAATGGACAAGTATGGGCAAGGAGTTGAGTTTCAGAATTCCAGGCTT CAACAGAACAAGGATATAAGTTTTGTGGGTTTCACAAACGAAATGCTTCTTGAGATGTGCATTTTCAGTGGTTGTGACTATCAACAATCATTACCAGGAA TGGGACTGAAAAGGGCACATGCATTAATTACAAAGTTCAAAAGCTATGACAAGGTGATCAAACATTTGAGATATAGCACAGTGTCTGTTCCTCCACTTTA TGAAGAATCATTCAAGAAAGCAATATTGACTTTCAGGCATCAACGTGTTTATGATCCTACTATGAAAGATATTGTACATTTGTCTGACCTGCCTGACAAT ATTGGCAATGATTTGGAATTTTTGGGCCCATTGATACCGCAACAGATAGCTACAGGTATAGCAAGAGGGGATCTGGATCCGTTTACTCAAATGCCATTCC AGTTACAGGGAGAAAGTAGCAGTTCTGTGCCGGTACCTAATGTAACTCCCAAATGCAAAAATTATAAACTGGAAAGTGGAAAGAAAAAGCTAGATTTGCC TGTCCAGAAGAATCTGCTGACTAAGTACTTCTGCTTTTCATCTCTGGAAGCAAAGAGAAACTTCAGAGCACCTCAGTTGTCACCTACAAGTCCAAGTCTA GTGATTCACACTTCTTCGAGTCCCAGCAATAATGGTAGTGAGGAGGCTGCTTCTTGTAATACCAGCTGCTCTTCAGCATCCTTAGTTGTCTCTAAGAGTG ACAGAAACAACCTCCACAGCAACAATGTGGAAAGTTGTTTTCCAGATGGAGTTCATGAGTTTATGGAGTCTCCAAGTCCTGGCATGGTGGATGAGAAGGG GCCTCCTGAAAGTATTTTGCTACAACAAATTGGTCATTCAATGCGTGGACCTTGTCAAGCATTACTAAAGGAGTGTAATAATGAGAACGCTCCAATTTCT GTTGAGGGGAAAACAAGAACAGAGAACAAAAGGGTCATTGTTAGGAGTCGTTTCTTCAAGCACAAGTCAATGAACAAGAATGGCCAAGACAATAAACAAG AAATGATCAGAGTCAAGGATGATGTTGCCAGTGATACGTTTGAAGATAGCATCCTTGAGGGATCTGAAAATAGAACAGGGAACAGAGAGATCACTATAAG GAGCTCTTTTTTCCAGCACAAGTCAGTTAATGAGAATGATCAAGGCAATAAACAAGAAAAGCTCTTAGAAAGGGATGATTCAGCCAACAATATTTATAAA GATTTCATTCTTGAGAGCCCTTCTGACAATAAATGTTCAAATGGCATCATGATGAAAAGAAAGACATCCCCAGATGACAATGTTCAAAGAAACATGGAAG TGAAGCACATGCGCACAGATGCATCTCTTCCTGATGATGGTTGCGATCCTCACCTCAAGGAGACATTAGCAGGGACGAAACTTGAGGAACGGAAGTTTGG ATCTGACATTTCACATATAAGCCATTATTCCAACATAGCAGAGAAATCAATGGAAAGTTTTATTTCTGTGATATCTTCATTTAGATACAACTCATCTGGT TCTCGTGCCAGTGGACTGCGAGCCCCTCTGAAAGACATTCGGAACACTTGTACCAATAGGTCGAATAATGCCGTTGATTTTAGCCAATTTGCTTACATTC CAAAGAACCAGAAGACCACAGTAGCATCTCTAAGACGCTGA
AA sequence Show only first row Show all	>Potri.011G077001.1 pacid=42781905 polypeptide=Potri.011G077001.1.p locus=Potri.011G077001 ID=Potri.011G077001.1.v4.1 annot-version=v4.1 MGIQGLLPLLKSIMVPIHIKELEGCSVAVDTYSWLHKGALSCSTQLCKGLPTSRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKIEQENKRARTRKENL VRAIEHESNGNSAAAYECYQKAVDISPSIAHELIQVLRQENVSYVVAPYEADAQMTFLSVCKQVDAVITEDSDLIPFGCHRIIFKMDKYGQGVEFQNSRL QQNKDISFVGFTNEMLLEMCIFSGCDYQQSLPGMGLKRAHALITKFKSYDKVIKHLRYSTVSVPPLYEESFKKAILTFRHQRVYDPTMKDIVHLSDLPDN IGNDLEFLGPLIPQQIATGIARGDLDPFTQMPFQLQGESSSSVPVPNVTPKCKNYKLESGKKKLDLPVQKNLLTKYFCFSSLEAKRNFRAPQLSPTSPSL VIHTSSSPSNNGSEEAASCNTSCSSASLVVSKSDRNNLHSNNVESCFPDGVHEFMESPSPGMVDEKGPPESILLQQIGHSMRGPCQALLKECNNENAPIS VEGKTRTENKRVIVRSRFFKHKSMNKNGQDNKQEMIRVKDDVASDTFEDSILEGSENRTGNREITIRSSFFQHKSVNENDQGNKQEKLLERDDSANNIYK DFILESPSDNKCSNGIMMKRKTSPDDNVQRNMEVKHMRTDASLPDDGCDPHLKETLAGTKLEERKFGSDISHISHYSNIAEKSMESFISVISSFRYNSSG SRASGLRAPLKDIRNTCTNRSNNAVDFSQFAYIPKNQKTTVASLRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	0	1
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.002G208251 [exp]	3.46	0.9304
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	4.24	0.9426	Pt-RGP3.4
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	4.89	0.9250
AT3G55490			GINS complex protein (.1)		Potri.010G189200 [exp]	7.07	0.9216	Pt-TTN10.2
AT1G16520			unknown protein		Potri.005G097600 [exp]	7.21	0.9151
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	10.53	0.9408
AT3G62060			Pectinacetylesterase family pr...		Potri.014G110900 [exp]	10.58	0.9124
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.015G009632 [exp]	11.74	0.8967
AT5G18610			Protein kinase superfamily pro...		Potri.010G215100 [exp]	12.00	0.9106
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Potri.001G025500 [exp]	12.72	0.9052

Compare expression of checked genes

Potri.011G077001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.