Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) AT3G27260 149 / 7e-38 GTE8 global transcription factor group E8 (.1.2) AT5G14270 140 / 8e-35 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G63320 130 / 2e-32 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 131 / 3e-32 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G06230 132 / 5e-32 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 126 / 4e-31 GTE3 global transcription factor group E3 (.1) AT1G17790 124 / 3e-30 DNA-binding bromodomain-containing protein (.1) AT5G65630 103 / 4e-23 GTE7 global transcription factor group E7 (.1) AT5G10550 97 / 5e-21 GTE2 global transcription factor group E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355300 [exp] 768 / 0 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.015G091800 [exp] 142 / 2e-35 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.019G090700 [exp] 140 / 7e-35 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 137 / 7e-34 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 136 / 2e-33 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.012G094300 [exp] 135 / 2e-33 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G376400 [exp] 125 / 4e-31 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 125 / 2e-30 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 114 / 1e-26 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011989 [exp] 356 / 5e-116 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002784 [exp] 343 / 2e-111 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 142 / 2e-35 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 141 / 5e-35 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10017661 [exp] 130 / 1e-31 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 130 / 1e-31 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 130 / 1e-31 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 107 / 3e-25 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10007096 [exp] 108 / 9e-25 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 107 / 2e-24 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.011G077100.3 pacid=42782151 polypeptide=Potri.011G077100.3.p locus=Potri.011G077100 ID=Potri.011G077100.3.v4.1 annot-version=v4.1 ATGATTGCTGCTGGGAGTGTAGTGATGAAGAAGTTGACAATTAAGATTGCTTCCCAAAGAATAGAAGTTATTCCTGGGAAAAAGTTGCTTGCTGCTGAAC GTAGTTGCAGTGTTTCTGTGAGTGAGAATCCTGGTTCTCAGACAAGTAAATCAGAAATTGTGAAGCAGAAATCTTCTGTGTCAGGTTCTAGGAAGCGTGG ACCACCAAAGATGATAGAGTGTAAACAGCAGAAGAGGCTGAAGATGGACCGTGCAGTGACACAACAGTGTTCTGCCCTTCTAAAATCACTGATGGTTCAT CCAGCTGGCTGGGTTTTCAATAAGCCTGTGGATCCAGTAGCACTGAATATTCCTGATTATTTCTCTATTATATCAATTCCCATGGATCTAGGAACAGTAA AGTCTAAGCTGGGAAAGAATTGTTATGCTAGCATCAAGGAGTTTGCAGATGATATCAGACTGACCTTTTCAAATGCCATGCTGTATAATCCTCCGACAAA TAATGTCCATAAAATGGCAGAGGAACTGAATGGGATTTTTGAGACAAGTTGGAAAGCTTTAGAGGATAAATGGAATCATGAAGGACCTAAGTTTGGAAGT GGAAAGATTATAAGTGGACAGACAACACAAATCATTGATTCCAGACCGAATTGTCCCAGAACACCTCCTCTGCACAGCAATGCTTTGCCAAAGAAGTCAA AACCATCTGAAGAAAAGGTGATAAGGTGCTCATCCAATGCAAGTGTTGTTTTGGAAGCAAAGCCTACTAAACCAGCAGGGGTGTGCAAGTCTCACGTGCC AAGTTCTTACAAAGGTGTGAAGTGGCAGAGTAGTGTTATAGGCACTGATGGTGGTGGAAGACATGCATGCGTCTCTAAGAATGTGAAGCCATTGTTGATC CCAGTTGCCTCAAACTGTAGTAGCTGTGGCAGTAATACTTGTCAATGCAGGCTCCAAAGTGATTCAAACCATACAAACTCAGATATATCATCTGAGAGAT CATCAGGGAGAGATCAGCGTGCATGTAGCACTGATACCTCCAAACCGTTATTTTTCCAGGAAAAAAGCATGCCTGTACCACAGATGAGCAAATCAGATCC AGATTCTGATGGGGCTGTTAGTGCTTTGGATGATGAAAATATATGTCCCAGTTCCCAGCTTACAACTCCGGCCGCAGATGCAGCATCTGGAGAAGACTGG AGCTCTCTCTTTGATGTTCCGTTGTCTCCAACTAAAGCTCTCCGTTATGCAACAATAAAACATCGATTTGCAGATACTATTTTAAAAGCTCAAAATAAGG CACCGCTTCATGATGGTGATAAAGCTGATCCAATGAAGATGCGGCAGGAGAAGGAAAGATTGGAAAGGCGGCAGCGGGAAGAGAAGTCTTGGATTGAAGC ACAAATCCGAGCTGCTGAAGCTGCCTCTCGAAGGAGGGAAGAGATGGAACTGAAAATGCAACGGGAGAGGGAAAGAGAAGCTGCTCGAATTGCGCTACAA AAGATGGAAAAGACTGTTGAGATTGAACAGAACCTAGATATCCAAAGAGAACTGGAGAGGCTCTGTGGCTGTTCAATATCATTCGATTTCCGTTTTGGCA GTGGAAAGATGGAAGTGGTAAAAAAGGGAGAAATTGGAGCTTGCATCGGTAGCCCGCTTGAGCGGTTGGGTTTGTTTATGAAAGATGACATTGAAGATGA GGATGGTGGGGAGTTTCTGGATGGAGATGGAGAAGAGGGGGAGATACTCTGTTAA
AA sequence Show only first row Show all	>Potri.011G077100.3 pacid=42782151 polypeptide=Potri.011G077100.3.p locus=Potri.011G077100 ID=Potri.011G077100.3.v4.1 annot-version=v4.1 MIAAGSVVMKKLTIKIASQRIEVIPGKKLLAAERSCSVSVSENPGSQTSKSEIVKQKSSVSGSRKRGPPKMIECKQQKRLKMDRAVTQQCSALLKSLMVH PAGWVFNKPVDPVALNIPDYFSIISIPMDLGTVKSKLGKNCYASIKEFADDIRLTFSNAMLYNPPTNNVHKMAEELNGIFETSWKALEDKWNHEGPKFGS GKIISGQTTQIIDSRPNCPRTPPLHSNALPKKSKPSEEKVIRCSSNASVVLEAKPTKPAGVCKSHVPSSYKGVKWQSSVIGTDGGGRHACVSKNVKPLLI PVASNCSSCGSNTCQCRLQSDSNHTNSDISSERSSGRDQRACSTDTSKPLFFQEKSMPVPQMSKSDPDSDGAVSALDDENICPSSQLTTPAADAASGEDW SSLFDVPLSPTKALRYATIKHRFADTILKAQNKAPLHDGDKADPMKMRQEKERLERRQREEKSWIEAQIRAAEAASRRREEMELKMQREREREAARIALQ KMEKTVEIEQNLDIQRELERLCGCSISFDFRFGSGKMEVVKKGEIGACIGSPLERLGLFMKDDIEDEDGGEFLDGDGEEGEILC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46550			DNA-binding bromodomain-contai...		Potri.011G077100 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	5.29	0.8205	Pt-RGA-II24.67
AT5G65050	MADS	MAF2, AGL31	MADS AFFECTING FLOWERING 2, AG...		Potri.003G170200 [exp]	6.32	0.7739
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	8.36	0.7520
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.008G186500 [exp]	12.40	0.7297
AT2G06040			unknown protein		Potri.006G142200 [exp]	18.97	0.7367
AT5G67320		HOS15	high expression of osmotically...		Potri.007G050100 [exp]	18.97	0.7730
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	19.28	0.7920
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	24.00	0.7605
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G150200 [exp]	25.92	0.6701
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	26.22	0.7847

Compare expression of checked genes

Potri.011G077100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.