Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EIF4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18040 299 / 9e-104 LSP1, CUM1, AT.EIF4E1, EIF4E eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) AT1G29550 271 / 1e-92 Eukaryotic initiation factor 4E protein (.1) AT1G29590 265 / 2e-89 eIF4E3 eukaryotic translation Initiation Factor 4E3, Eukaryotic initiation factor 4E protein (.1.2) AT5G35620 192 / 5e-62 eIFiso4E, EIF(ISO)4E, EIF(ISO)4E, EIF4E2, EIF(ISO)4E, LSP1, LSP, EIF(ISO)4E, EIF(ISO)4E, EIF(ISO)4E LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) AT5G18110 126 / 8e-36 NCBP novel cap-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066700 [exp] 240 / 8e-81 AT5G35620 254 / 1e-86 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.008G171100 [exp] 237 / 2e-79 AT5G35620 249 / 5e-85 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.013G057000 [exp] 125 / 1e-35 AT5G18110 358 / 6e-127 novel cap-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005410 [exp] 336 / 4e-118 AT4G18040 318 / 3e-111 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015247 [exp] 333 / 3e-117 AT4G18040 322 / 1e-112 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10011988 [exp] 327 / 9e-115 AT4G18040 315 / 4e-110 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10002785 [exp] 325 / 1e-113 AT4G18040 313 / 7e-109 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015251 [exp] 237 / 1e-79 AT4G18040 241 / 3e-81 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10023733 [exp] 232 / 1e-77 AT5G35620 261 / 2e-89 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10011776 [exp] 227 / 1e-75 AT5G35620 263 / 4e-90 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10020282 [exp] 126 / 1e-35 AT5G18110 347 / 1e-122 novel cap-binding protein (.1) Lus10005704 [exp] 120 / 1e-33 AT5G18110 345 / 6e-122 novel cap-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0625 [poplar] [flax] eIF4e PF01652 [poplar] [flax] IF4E Eukaryotic initiation factor 4E
Representative CDS sequence Show only first row Show all	>Potri.011G077200.1 pacid=42780655 polypeptide=Potri.011G077200.1.p locus=Potri.011G077200 ID=Potri.011G077200.1.v4.1 annot-version=v4.1 ATGGATGTTGAAGACCCACAAAAATTAGCAACAGAAAAAACTCCAAACCCTAACACCGAAGACGATCTAGAAGAAGGAGAGATCGTTGCAGGAGGAGATG ACGACTCATCGTTAAAGAAATCAGTTTCTTTACCATACCAGCCTCACCCACTTGAACATCAATGGACTTTCTGGTTCGATAATCCATCTGCCAAATCCAA ACAAGCCAGTTGGGGTAGCAGCCTGCGCTCCATCTTCACTTTTTCTACTATTGAGGAGTTTTGGAGTGTTTACAACAATATACATCACCCGAGCAAGCTG GCTGTTGGAGCAGACTTTCATTGCTTCAAAGATAAAATTGAGCCAAAATGGGAGGACCCTATTTGTGCTAATGGAGGGAAGTGGAGTGTAACTCTTAGTA AAGGAAAATCTGATACTTTTTGGTTGAATACGTTGTTGGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATTTGTGGAGCAGTGGTCAGTGTGAG GGCTAGGCAGGAAAAGATTGCTATCTGGACTAAGAATGCTTCAAATGAAACTGCTCAGGTGAGCATTGGAAAACAGTGGAAGGAGTTTCTCGATTACAAT GAGACTATTGGGTTCATATTCCATGATGATGCGAAGAAAGACAGAAATGCCAAGAATCGCTACTCAGTATGA
AA sequence Show only first row Show all	>Potri.011G077200.1 pacid=42780655 polypeptide=Potri.011G077200.1.p locus=Potri.011G077200 ID=Potri.011G077200.1.v4.1 annot-version=v4.1 MDVEDPQKLATEKTPNPNTEDDLEEGEIVAGGDDDSSLKKSVSLPYQPHPLEHQWTFWFDNPSAKSKQASWGSSLRSIFTFSTIEEFWSVYNNIHHPSKL AVGADFHCFKDKIEPKWEDPICANGGKWSVTLSKGKSDTFWLNTLLALIGEQFDHGDEICGAVVSVRARQEKIAIWTKNASNETAQVSIGKQWKEFLDYN ETIGFIFHDDAKKDRNAKNRYSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Potri.011G077200 [exp]	0	1	EIF4.2
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.019G092500 [exp]	11.78	0.8993	RAB11.11
AT1G30890			Integral membrane HRF1 family ...		Potri.017G028425 [exp]	12.00	0.8666
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G330200 [exp]	13.03	0.8882
AT5G55070			Dihydrolipoamide succinyltrans...		Potri.011G089200 [exp]	20.39	0.8618
AT4G16450			unknown protein		Potri.006G016300 [exp]	21.63	0.8765
AT2G25310			Protein of unknown function (D...		Potri.006G257100 [exp]	26.00	0.8712
AT1G42480			unknown protein		Potri.005G253600 [exp]	26.26	0.8679
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Potri.005G250900 [exp]	27.92	0.8186
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.008G107800 [exp]	28.42	0.8259	Pt-SAR1.3
AT3G52730			ubiquinol-cytochrome C reducta...		Potri.004G188700 [exp]	35.32	0.8589

Compare expression of checked genes

Potri.011G077200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.