Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 195 / 6e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 171 / 4e-44 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 161 / 1e-40 transmembrane receptors;ATP binding (.1.2) AT5G49140 142 / 9e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 138 / 2e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 134 / 4e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 134 / 4e-32 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G63870 129 / 2e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 127 / 4e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 126 / 1e-29 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008868 [exp] 1113 / 0 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 1109 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G269900 [exp] 1061 / 0 AT5G36930 284 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 1050 / 0 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 1036 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013450 [exp] 1033 / 0 AT5G36930 422 / 2e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 1033 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012750 [exp] 1016 / 0 AT5G36930 195 / 3e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 1016 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 294 / 7e-86 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10033825 [exp] 276 / 5e-81 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 246 / 4e-69 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 198 / 1e-52 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 196 / 6e-52 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 171 / 8e-44 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 165 / 6e-42 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003749 [exp] 157 / 1e-39 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 148 / 2e-36 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 147 / 6e-36 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G077260.1 pacid=42780550 polypeptide=Potri.011G077260.1.p locus=Potri.011G077260 ID=Potri.011G077260.1.v4.1 annot-version=v4.1 ATGGAAGTGATTCCTAATTTTGAAGTTCAAAAGGTTCTTCGAATAACTTACGACTTTCTTGATAATTATCTGATGAACTTATTCCTTGATATTGCATATT TCTTCTATGGAATGGATGTGGATGATGCAGTTAGGATACTGGATGGGCTCGATAAAGGTGCAAGATTTGGGATTGACAATCTCATCGATAGATGTCTTGT TGAAATCAACATTGATCAAAGGTTGTGGATGCATCAACTAGTAAGAGATATGGGAAGGGAAATTGCTCGTCAAGAATCACCCAAATGTCAAAGAATATGG CGCCACGAGGATGCTTTTGCAGTTTTGAAAGGAACTACTGATGCTGAAAAATTGCGTGGCCTTACCCTGGATATGCGTACATTAATGGAAGATGATTATG CAAAAGTTGTTTGTACCAGTTCAATTGTTCGCCGCAAGCTCGCCAGGCTTAACTTCTTTCAACAAAGGCTTTCTGACTTTTCTGATGGGAGAAGTTTACA AACTAGCCAAAAAAGTTTGTTTTCCATCCTCAGTACCGATGCTTTTAGAAAGATGCCAGATGTAAAATTTCTCCAACTAAATTACACGAAGTTCTATGGA AGTTTTGAGCACTTCCCTAAGAATTTGATATGGTTATGTTGGTATGGATTCTCTTCGAGATCCATACCAAATCATGTATGCTTGAAGAAGCTGGTGGTTC TTGATCTATCCAGAAGCTGTCTAGTTGATGCTTGGAAAGGCAAACCGTTTCTTTCAAAATTAAAAATTCTTGATCTCCATTACTCTCTTAATCTCATTAG AACCCCAGACTTCTCGGGTCTCCCAGCCCTTGAAAAGCTAATACTTGAAGACTGCATTCGTTTGGTTCAAATTCAAGAATCTATTGGTGATTTAGAAAGA CTGTTGATCTTAAATCTAAGAAATTGTACAAGTCTTATGGAGCTTCCAGAAGAAATGAGTAGATTGAATTCACTTCAAGAGCTGGTTTTAGATGGTTGCT CAAATCTTGACAGCCTGAATATGGAGTTAGAGCATCATCAGGGGCGCAGCTTGCTTCAAAGCGATGGAATTGTTGCAAGTACATCATACATTACATCTCT TCCATTGAAGCTATTCTTTCCCTCTAGGTTTTCAGCGAGGAAAATGTTGAGATTTACCTTGTTTTCACTGCCACGCTCCTTAAGGAGACTAGATTTAAGT GGCACAACAATTCGTTCTCTTCCAGAAAGCATCAAGGATCTTGGTCTACTCATTGACCTATATTTAAGAAATTGCAAAATGCTTCAGACACTCCCAGAGC TTCCATCCCATTTGTGGTTGTTAGATGTGTCCTTTTGCTATTCATTGCTAAGAATTCCAAGTGTAGACCGTTGGACTAAAGCAAATGGTTATGATCAATT AGTCGAGTTCCAAGATTGGATGAAGCAAGAATCAATCCAAAAGTTCGACTCACACATGTTCAGAATAATGGAAATGGTTAGTGCTCAAATACAGCCATCG AGATTTCAGATCATATTTATAGATGACATATTCAAAGTTGTCGTCCATGTATTTGATGAAGATGAGAAGTTAAGGGGTTTTTATGAGGAGGAAGAAGAGG ATAAATGGCTAATTCAGAAAGAGTTTGTAGATAACTTTTCTTTCAAAATATCCTCACCTGAGACGCACCGGATATGTGGCTTTAATCTGTTCACAGGGTT TTGTACGATGTCAGGGTATAGTCGCTGTGATCCTTTTTATATTGAAATCAGAAACAATACCATTGGTCGATCCTTGATTTGTCAAGCCCATATCTTCCCT GTGAGATCCAAGCGTGGTGTTCGTGAAATCCAATCGCTAATGCACATGAAATTAGGGGTCGATGATCCTACATTTGATAATGGTGATGACGTGAGTATTT CAGTGCTTCCACTTGATCCAAATATTCAAATAAGGACGATTGGTGTACAATGGTTGCATGAAGAGGAAGGAAATGATGATGATATCCAATCAAAGGATGA ATTTATCACTGCCCACAACAGTAGCGATGATGATGATGATGATGATGCACACGTAGCCAAAGTAGAAATAGCTTCTCGTATTCTTAGAAATTATGATTGT TCTTTTCGTTCTGAATTTTATGATGGCGATTTTGCTTGGTGGTTTTTTTGCAAAGAAAGGTCTTGA
AA sequence Show only first row Show all	>Potri.011G077260.1 pacid=42780550 polypeptide=Potri.011G077260.1.p locus=Potri.011G077260 ID=Potri.011G077260.1.v4.1 annot-version=v4.1 MEVIPNFEVQKVLRITYDFLDNYLMNLFLDIAYFFYGMDVDDAVRILDGLDKGARFGIDNLIDRCLVEINIDQRLWMHQLVRDMGREIARQESPKCQRIW RHEDAFAVLKGTTDAEKLRGLTLDMRTLMEDDYAKVVCTSSIVRRKLARLNFFQQRLSDFSDGRSLQTSQKSLFSILSTDAFRKMPDVKFLQLNYTKFYG SFEHFPKNLIWLCWYGFSSRSIPNHVCLKKLVVLDLSRSCLVDAWKGKPFLSKLKILDLHYSLNLIRTPDFSGLPALEKLILEDCIRLVQIQESIGDLER LLILNLRNCTSLMELPEEMSRLNSLQELVLDGCSNLDSLNMELEHHQGRSLLQSDGIVASTSYITSLPLKLFFPSRFSARKMLRFTLFSLPRSLRRLDLS GTTIRSLPESIKDLGLLIDLYLRNCKMLQTLPELPSHLWLLDVSFCYSLLRIPSVDRWTKANGYDQLVEFQDWMKQESIQKFDSHMFRIMEMVSAQIQPS RFQIIFIDDIFKVVVHVFDEDEKLRGFYEEEEEDKWLIQKEFVDNFSFKISSPETHRICGFNLFTGFCTMSGYSRCDPFYIEIRNNTIGRSLICQAHIFP VRSKRGVREIQSLMHMKLGVDDPTFDNGDDVSISVLPLDPNIQIRTIGVQWLHEEEGNDDDIQSKDEFITAHNSSDDDDDDDAHVAKVEIASRILRNYDC SFRSEFYDGDFAWWFFCKERS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.011G077260 [exp]	0	1
AT5G44870		TTR1, LAZ5	tolerance to Tobacco ringspot ...		Potri.006G282700 [exp]	4.47	0.8897
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	9.27	0.7776
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.004G168100 [exp]	11.61	0.8009
AT3G14470			NB-ARC domain-containing disea...		Potri.017G127651 [exp]	16.73	0.8548
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145566 [exp]	18.70	0.8481
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.005G054400 [exp]	18.73	0.7340
AT4G23270		CRK19	cysteine-rich RLK (RECEPTOR-li...		Potri.011G035850 [exp]	25.41	0.7806
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.008G107900 [exp]	30.13	0.6951
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	31.24	0.8466
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145572 [exp]	32.68	0.8359

Compare expression of checked genes

Potri.011G077260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.