Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14130 344 / 2e-119 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G30270 341 / 2e-118 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT3G23730 337 / 1e-116 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G48070 332 / 1e-114 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT4G25810 331 / 5e-114 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 329 / 2e-113 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57550 323 / 4e-111 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57530 311 / 2e-106 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT1G65310 308 / 2e-105 XTH17, XTR1, ATXTH17 xyloglucan endotransglucosylase/hydrolase 17 (.1) AT2G18800 309 / 3e-105 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 355 / 1e-123 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 350 / 2e-121 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 350 / 2e-121 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 349 / 4e-121 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G236200 [exp] 348 / 4e-121 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 340 / 7e-118 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G094900 [exp] 335 / 9e-116 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 333 / 4e-115 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.002G060400 [exp] 332 / 2e-114 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028947 [exp] 352 / 2e-122 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10010938 [exp] 343 / 7e-119 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10010939 [exp] 342 / 1e-118 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 342 / 3e-118 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031392 [exp] 338 / 4e-117 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 335 / 7e-116 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 334 / 2e-115 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10000678 [exp] 333 / 3e-115 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 331 / 4e-114 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10003048 [exp] 330 / 7e-114 AT3G23730 380 / 7e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.011G077380.1 pacid=42781614 polypeptide=Potri.011G077380.1.p locus=Potri.011G077380 ID=Potri.011G077380.1.v4.1 annot-version=v4.1 ATGAATATAAGGGTTAAAGAGTCGTTAAGCAGAAGAAGAGGGAGGGCCTATCATATTGATTCACTCCCTTCTTTCCCTTTGAAGATGGCGAATAGAGTTT CAATAACATTGTTGGTTTCTCTGTTTGTCAGCTCCTTCCTTGCTGCTTCGGCAGGTAATTTCTACCGAGATGTAGACATTACATGGGGAGATGGTCGGGG CAAGATACTACGCCGAGGGAACACACTTTCCCTTTCTCTTGACAAGACTTCAGGCTCCGGATTCCAATCCAAGAGAGCATATCTCTTCGGAAGGTTCGAC GTGCAAATGAAGCTTGTCCCTGGAAACTCTGCAGGGACTGTCACCACCTTCTATCTAACATCGCAAGGAAACAAGCATGACGAGATTGACTTCGAGTTCT TGGGAAACCAAAGTGGGAACCCTTATACTTTGCATACTAATGTGTATACCCAAGGACAAGGGAATAGGGAGCAAGAATTCCGCCTGTGGTTCGATCCAAC GTTTAAGTTTCACACGTACTCAATTATATGGAATCCCCAACGCATCATTATTTTAGTAGATAACATTCCCATAAGGGTGTTCAGTAATTTAGAAGCCATT GGAGTTCCTTATCCCAAAAACCAGCCCATGAAGATTCAAGCAAGCCTCTGGGATGCAGAGGATTGGGCGACACAAGGTGGAAAGGTGAAAACAGACTGGT CCATGGCTCCTTTCACTGCATATTACAGAAACTTCAGTGCACTCACTACTGACTCTAGTGGATTCAAGGGCTGGCTGACTCAAGATCTTGATGTGCAAGG TAGAAAATTGCTCCGATGGGTGCAGAAGTATTACATGTTATACAACTATTGTGCCGATCGAAGACGCAGGTTTAGCCATCGTGAATGCACACGATCTAGG TTCCTATGA
AA sequence Show only first row Show all	>Potri.011G077380.1 pacid=42781614 polypeptide=Potri.011G077380.1.p locus=Potri.011G077380 ID=Potri.011G077380.1.v4.1 annot-version=v4.1 MNIRVKESLSRRRGRAYHIDSLPSFPLKMANRVSITLLVSLFVSSFLAASAGNFYRDVDITWGDGRGKILRRGNTLSLSLDKTSGSGFQSKRAYLFGRFD VQMKLVPGNSAGTVTTFYLTSQGNKHDEIDFEFLGNQSGNPYTLHTNVYTQGQGNREQEFRLWFDPTFKFHTYSIIWNPQRIIILVDNIPIRVFSNLEAI GVPYPKNQPMKIQASLWDAEDWATQGGKVKTDWSMAPFTAYYRNFSALTTDSSGFKGWLTQDLDVQGRKLLRWVQKYYMLYNYCADRRRRFSHRECTRSR FL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.011G077380 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.001G024401 [exp]	5.47	0.5974
					Potri.011G041124 [exp]	9.05	0.7118
					Potri.006G126750 [exp]	23.32	0.5935
AT5G59030		COPT1	copper transporter 1 (.1)		Potri.001G246000 [exp]	23.43	0.6884
					Potri.014G100650 [exp]	28.28	0.6137
AT1G75717			unknown protein		Potri.005G238400 [exp]	28.28	0.6428
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G048000 [exp]	50.47	0.6054
					Potri.017G063200 [exp]	51.65	0.5721
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.005G188900 [exp]	56.92	0.6159
AT5G24920		ATGDU5	glutamine dumper 5 (.1)		Potri.017G107100 [exp]	57.00	0.5725

Compare expression of checked genes

Potri.011G077380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.