Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47810 337 / 5e-120 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354000 [exp] 367 / 1e-131 AT3G47810 340 / 6e-121 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012851 [exp] 349 / 1e-124 AT3G47810 347 / 6e-124 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10030497 [exp] 344 / 1e-122 AT3G47810 346 / 2e-123 VACUOLAR PROTEIN SORTING 29, MAIGO 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF12850 [poplar] [flax] Metallophos_2 Calcineurin-like phosphoesterase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.011G077900.2 pacid=42781280 polypeptide=Potri.011G077900.2.p locus=Potri.011G077900 ID=Potri.011G077900.2.v4.1 annot-version=v4.1 ATGGTGTTGGTATTGGCTCTGGGGGATCTACACATACCCCACAGAGCACCTGATCTCCCTGCAAAGTTCAAGTCCATGCTCGTTCCCGGCAAGATCCAGC ATGTCATTTGCACTGGCAATCTTTCTATCAAAGAAGTTCATGACTATTTGAAGACTCTTTGCCCTGACTTACATATTACTCGAGGCGAATATGATGAAGA TACTCGATATCCTGAGACCAAAACTTTAACTATTGGTCAATTCAAGTTAGGACTATGCCATGGTCATCAGGTTGTTCCATGGGGGGATTTAGACTCGCTA GCAATGCTCCAGAGGCAGCTGGATGTAGACATACTTGTGACTGGTCATACCCATCAATTCACAGCTTACAAGCATGAGGGGGGTGTTGTTATAAACCCAG GCTCCGCCACTGGTGCCTACAGCAACATTACCTATGATGCGAACCCAAGCTTTGTCCTCATGGACATCGATGGCCTACGTGTTGTGGTGTATGTTTACGA GCTCATTGATGGTGAGGTTAAAGTCGACAAGATTGATTTTAAGAAGACGACCGCCACAACTCATTCTGCTCATTGA
AA sequence Show only first row Show all	>Potri.011G077900.2 pacid=42781280 polypeptide=Potri.011G077900.2.p locus=Potri.011G077900 ID=Potri.011G077900.2.v4.1 annot-version=v4.1 MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHVICTGNLSIKEVHDYLKTLCPDLHITRGEYDEDTRYPETKTLTIGQFKLGLCHGHQVVPWGDLDSL AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSNITYDANPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTTATTHSAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.011G077900 [exp]	0	1
AT5G23550			Got1/Sft2-like vescicle transp...		Potri.004G135000 [exp]	1.00	0.9407
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	3.74	0.9352
AT4G29850			Eukaryotic protein of unknown ...		Potri.018G133500 [exp]	4.00	0.9289
AT2G45530			RING/U-box superfamily protein...		Potri.011G149200 [exp]	5.74	0.9304
AT1G71790			Subunits of heterodimeric acti...		Potri.005G199600 [exp]	6.32	0.9188
AT5G42000			ORMDL family protein (.1.2)		Potri.001G086300 [exp]	10.00	0.9023
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Potri.002G133100 [exp]	11.22	0.9232
AT1G12640			MBOAT (membrane bound O-acyl t...		Potri.001G110100 [exp]	11.31	0.9088
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.001G050400 [exp]	11.66	0.9207
AT4G27435			Protein of unknown function (D...		Potri.001G403600 [exp]	12.64	0.9262

Compare expression of checked genes

Potri.011G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.