Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46410 419 / 1e-143 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 399 / 8e-136 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G11860 268 / 1e-86 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT1G29780 129 / 2e-34 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 121 / 4e-31 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 117 / 7e-30 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 85 / 4e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G55900 84 / 3e-17 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G43610 65 / 1e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 62 / 9e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353700 [exp] 841 / 0 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 275 / 8e-87 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G054700 [exp] 259 / 5e-81 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G072000 [exp] 115 / 1e-28 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 112 / 1e-27 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G093000 [exp] 79 / 9e-16 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.008G068800 [exp] 76 / 3e-15 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G364500 [exp] 77 / 4e-15 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.006G100800 [exp] 74 / 3e-14 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004596 [exp] 608 / 0 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10004551 [exp] 508 / 3e-178 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 487 / 2e-170 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 247 / 1e-76 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10037019 [exp] 184 / 5e-50 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10029273 [exp] 113 / 8e-28 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 111 / 3e-27 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 86 / 4e-18 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 86 / 4e-18 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 82 / 7e-17 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.011G078300.3 pacid=42782201 polypeptide=Potri.011G078300.3.p locus=Potri.011G078300 ID=Potri.011G078300.3.v4.1 annot-version=v4.1 ATGCCATCATTCAAAATGAAGACCAACCTAAACATGAGTTCTATAAGAGAAACAAATTGTCTTAGTGTGTGTCAAAAGTCAAATGTAATATCCAAAAAAT CATACTCCCATGTCTCAGTTTCTCAACAACCTGCAGAGTTCGACAAGTGTGTTCAGAAATGTCAGGATGGCTGTGTTGCTTCGAGTATGGAAATATACAC ACAGGAGGGGGACATTAAAAATAATGAAGCTGTTGATCTGCAAGACTTGCCCCGTGATGGTAATTCTCAGTTTCTGAAGCAGCTACCAATCTCTGTAGAT TCTGGCACAACTGGGGATATTGAATCCATTTATAACTTTGCATCAAACTTGGAGACAATTTTTTCTCCTGTTCTGGAGCCCATTGAAGTCCTCAGTGTGC CAAATATTGATGATGGTGCAGGGAATAACAACGATCTTTACGTGCCGGGTTTGGGTCCTGATGATAGTGATTATAATAAAAGTTCATGTGATTATCAAAC TTGCAACATATCGGATTTCTTTATTTCCGACATGATTATTGCTAGCTTACCATTTGGTGAGAGTGCTGTTGTCAATGATTTCACCGATGCGAATCCTTTT CTTGATTACAAGTGCGCTGAGCCAAGTATGTTGTTTGATGTGGCTGAGGAGTGCATGATACTACCTTTTCTCAAGGATACTGCCAAAGTGAGCGACTCCA ATGATATGAAATCAAGTGAAGAAGCCATGATAGATTCAGATAACAGTGGTTTGTATCTAGCAATTAATCAGATAAGATCTTGTGACCAGGAATCTGATCT AATCACTGACTCAGACCAAGCAGAAGACTTTGATCCTCAGTTCTTTATCAGAAATTTGCCGGAATTATCTGATGTGGTTTCAAATTTCCGGCCCTCTATC AGCCCAAAGGAGCCTTGCAGAAGAAAGTCCATAACCCTGGTGCTTGATTTGGATGAAACACTTGTCCACTCAACATTGGAACATTGCGATGATGCGGATT TCACCTTTACTGTGTTTTTCAATATGAAAGAGCACACAGTGTATGTAAAACAGAGGCCTCACGTCCACACTTTCTTGGAGAGAGTTGCAGAGATGTTTGA AGTTGTTATCTTCACAGCTAGCCAGAGCATCTATGCAGCACAGCTTTTGGACATGCTGGATCCTGATAGAAAGCTTATATCTCGGCGGATTTATCGTGAA TCGTGCATTTTTTCAGATGGAAGTTACACAAAAGATTTGACAGTTTTAGGTGTTGATCTTGCCAAAGTTGCTATAATTGATAATTCTCCACAGGTTTTCA GGTTGCAAGTAAATAATGGGATTCCTATTAAGAGCTGGTTTAGTGATTCATCAGATTGCGCGCTAATTTCATTACTACCCTTCTTAGAGACCCTGGTCAA TGCTGATGATGTCCGGCCCATCATTGCAAAGAGATTTGGTAACAAGGAATAA
AA sequence Show only first row Show all	>Potri.011G078300.3 pacid=42782201 polypeptide=Potri.011G078300.3.p locus=Potri.011G078300 ID=Potri.011G078300.3.v4.1 annot-version=v4.1 MPSFKMKTNLNMSSIRETNCLSVCQKSNVISKKSYSHVSVSQQPAEFDKCVQKCQDGCVASSMEIYTQEGDIKNNEAVDLQDLPRDGNSQFLKQLPISVD SGTTGDIESIYNFASNLETIFSPVLEPIEVLSVPNIDDGAGNNNDLYVPGLGPDDSDYNKSSCDYQTCNISDFFISDMIIASLPFGESAVVNDFTDANPF LDYKCAEPSMLFDVAEECMILPFLKDTAKVSDSNDMKSSEEAMIDSDNSGLYLAINQIRSCDQESDLITDSDQAEDFDPQFFIRNLPELSDVVSNFRPSI SPKEPCRRKSITLVLDLDETLVHSTLEHCDDADFTFTVFFNMKEHTVYVKQRPHVHTFLERVAEMFEVVIFTASQSIYAAQLLDMLDPDRKLISRRIYRE SCIFSDGSYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIKSWFSDSSDCALISLLPFLETLVNADDVRPIIAKRFGNKE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	0	1
					Potri.013G087300 [exp]	1.00	0.9169
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	1.73	0.8986
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	2.00	0.9092
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	4.24	0.8943
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	4.47	0.8946	RHF2.3
AT5G45190			Cyclin family protein (.1.2)		Potri.005G097400 [exp]	4.47	0.8966
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	6.48	0.8732
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	6.63	0.8772
AT2G43250			unknown protein		Potri.007G124700 [exp]	8.77	0.8870
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	8.94	0.8717

Compare expression of checked genes

Potri.011G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.