Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46390 574 / 0 Peptidase S41 family protein (.1.2) AT3G57680 210 / 6e-62 Peptidase S41 family protein (.1) AT4G17740 199 / 4e-58 Peptidase S41 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173900 [exp] 216 / 2e-64 AT4G17740 699 / 0.0 Peptidase S41 family protein (.1.2) Potri.006G055400 [exp] 213 / 3e-63 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1) Potri.010G063400 [exp] 83 / 6e-19 AT4G17740 174 / 3e-53 Peptidase S41 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004601 [exp] 610 / 0 AT5G46390 619 / 0.0 Peptidase S41 family protein (.1.2) Lus10004545 [exp] 475 / 1e-165 AT5G46390 488 / 2e-170 Peptidase S41 family protein (.1.2) Lus10004402 [exp] 217 / 1e-63 AT4G17740 610 / 0.0 Peptidase S41 family protein (.1.2) Lus10023704 [exp] 214 / 7e-63 AT4G17740 597 / 0.0 Peptidase S41 family protein (.1.2) Lus10040494 [exp] 209 / 1e-61 AT3G57680 692 / 0.0 Peptidase S41 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [poplar] [flax] PDZ-like PF00595 [poplar] [flax] PDZ PDZ domain CL0127 [poplar] [flax] ClpP_crotonase PF03572 [poplar] [flax] Peptidase_S41 Peptidase family S41
Representative CDS sequence Show only first row Show all	>Potri.011G078700.1 pacid=42781190 polypeptide=Potri.011G078700.1.p locus=Potri.011G078700 ID=Potri.011G078700.1.v4.1 annot-version=v4.1 ATGAGTGTCTGTCTCTTCAATTCCCCGCCTACACTCTCTTTACCAACGCCAGCAAAGAGAACCCTAAATAGTATCCTCGACACCAGCAACAATTGGACCA GGAAAACCTTATTAGGTGGTGCCATAACTGGAGCACTCTCAATCAATTTATTACTTTCCTCTCCATCTTTACTTGCTTTAGAATCTCCATCGCCATCACT CGAACATTCACAATCAACAGAATATCTTTGCCGTGAAGAAGAAACCCAACAAGACTTTAAAGTAGAGAGCGAAGCTCCTCAAGTGGTGACTAATGAAGGA ATTGTGGAAGAAGCTTGGGAGATTGTCAATGATAGCTTTCTTGATAGTGGGCGACGTCGATGGACTCCTCAATCTTGGCAGCAAAAGAAGGAAGATATTT TAAGCGGATCGATTCAATCGAGAGCAAAAGCCCATGATATAATTAGAAGGATGTTGGCTAGTTTAGGTGATCCTTACACGCGGTTTCTTTCACCTGCTGA GTTTTCGAAGATGGGGAGGTATGACGTCTCTGGTATTGGAATAAACCTTAGGGAAATTCCTGATGAAAATGGAGAGGTCAAACTGAAAGTTCTTGGATTA TTACTTGATGGGCCTGCGTATTCTGCTGGTGTAAGACAGGGTGATGAATTATTATCTGTTAATGGAGAGGATGTCAAAGGGAAATCAGCATTTGAAGTAT CATCATTGTTACAGGGCCCAAATGAAACATTTGTGACAATCAAGGTGAAGCATGGAAATTGTGGACCTGTTCACTCTATAGAGGTCCAGAGACAACTTGT TGCTCGAACTCCAGTCTCTTATCGTCTGGAACAAATTGAAAACAGCACCGCTTCTGTTGGGTACATACGCTTGAGAGAATTCAATGCATTGGCTAGAAAA GATTTGGTAATTGCAATGAAGCGACTTCAAGACAGGGGTGCCTCATATTTTATTCTGGATCTGAGAGATAATCTTGGTGGATTAGTACAGGCTGGAATTG AAATTTCGAAGCTCTTTCTGAATGAAGGGGAGAAGGTTATTTATACTGCCGGAAGGGATCCACAATACCAAAACACGATTGTAGCAGACAGCGCACCGTT GGTCAAAGCTCCTGTTATTGTTTTGGTGAACAACAAAACTGCTAGTGCGAGTGAAATTGTTGCCTCTGCACTTCATGATAACTGTAGAGCTGTGCTTGTG GGAGAAAGGACTTTTGGCAAGGGTTTGATTCAATCAGTTTTTGAACTTCATGATGGGTCCGGAGTGGTTGTCACTGTTGGGAAGTATGTCACACCAAATC ACATGGACATAAATGGTAATGGAATAGAGCCAGACTATCAAAACTTTCCAGGTTGGAGTGATGTTAAAAAACACCTGTCAGAATGCAACATCAACCGGCA AGGGTAA
AA sequence Show only first row Show all	>Potri.011G078700.1 pacid=42781190 polypeptide=Potri.011G078700.1.p locus=Potri.011G078700 ID=Potri.011G078700.1.v4.1 annot-version=v4.1 MSVCLFNSPPTLSLPTPAKRTLNSILDTSNNWTRKTLLGGAITGALSINLLLSSPSLLALESPSPSLEHSQSTEYLCREEETQQDFKVESEAPQVVTNEG IVEEAWEIVNDSFLDSGRRRWTPQSWQQKKEDILSGSIQSRAKAHDIIRRMLASLGDPYTRFLSPAEFSKMGRYDVSGIGINLREIPDENGEVKLKVLGL LLDGPAYSAGVRQGDELLSVNGEDVKGKSAFEVSSLLQGPNETFVTIKVKHGNCGPVHSIEVQRQLVARTPVSYRLEQIENSTASVGYIRLREFNALARK DLVIAMKRLQDRGASYFILDLRDNLGGLVQAGIEISKLFLNEGEKVIYTAGRDPQYQNTIVADSAPLVKAPVIVLVNNKTASASEIVASALHDNCRAVLV GERTFGKGLIQSVFELHDGSGVVVTVGKYVTPNHMDINGNGIEPDYQNFPGWSDVKKHLSECNINRQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46390			Peptidase S41 family protein (...		Potri.011G078700 [exp]	0	1
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.009G041100 [exp]	8.00	0.8862
AT5G23690			Polynucleotide adenylyltransfe...		Potri.012G105000 [exp]	20.78	0.8269
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	28.61	0.8727
					Potri.014G179200 [exp]	35.79	0.8669
AT2G46340		SPA1	SUPPRESSOR OF PHYA-105 1, SPA ...		Potri.014G095300 [exp]	40.06	0.8617	SPA1.1
AT1G56180			unknown protein		Potri.010G171400 [exp]	40.55	0.8506
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	42.04	0.8562
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G064000 [exp]	68.55	0.8351
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	88.98	0.8543
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026600 [exp]	93.73	0.8170

Compare expression of checked genes

Potri.011G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.