Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29350 650 / 0 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 646 / 0 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 332 / 3e-101 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 73 / 6e-13 Kinase-related protein of unknown function (DUF1296) (.1) AT3G07660 69 / 1e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 57 / 4e-08 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353100 [exp] 1338 / 0 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 306 / 3e-90 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 144 / 1e-35 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 88 / 2e-17 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 85 / 2e-16 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 64 / 3e-10 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 62 / 2e-09 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.011G079800 [exp] 45 / 0.0003 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004543 [exp] 902 / 0 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 880 / 0 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 852 / 0 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 734 / 0 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10000188 [exp] 437 / 1e-145 AT1G29350 305 / 6e-96 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007339 [exp] 123 / 9e-29 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 89 / 9e-18 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 66 / 1e-10 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10036414 [exp] 64 / 5e-10 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 56 / 1e-09 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF06972 [poplar] [flax] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Potri.011G078800.3 pacid=42781918 polypeptide=Potri.011G078800.3.p locus=Potri.011G078800 ID=Potri.011G078800.3.v4.1 annot-version=v4.1 ATGAGTGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGTAAATAACAATAATGGAAAGGGTAACACTGGAATATCAGGGATACCAGCAGCGTCAAGGAAGA TGGTACAAAGCTTGAAGGAGATTGTTAACTGTCCTGAACCTGAGATCTACGCTATGCTTAAAGAGTGTAACATGGACCCTAATGAGGCTGTTAATCGCCT CCTCTCTCAAGATCCTTTCCATGAGGTGAAGAGCAAGCGAGAAAAGAAAAAAGAGAATAAGGATTCAACTGATTTCAGGTCTCGTGGTGCTAGTAACATT TCGAATCGTGGTGGTAGAGGCGGTGCAGACCGTTATGGGCGCGGTGGCCCTGGGAGGTCTGCGTATTTCAACTCTAATGAATCCAGCACTTTCCACAGCA AACCTGCATACAAGAAGGAAAATGGAACAAATGCTTATATTGATCCTTTTCCTTCTGCATCTGGTATTGCAGGAAATAATATTAATTGGCAACCTCCATC GCACAGTGATTCTGTGGCCGCAGAAAATAAAATGTCCACCATAGGTGCAGGTGATGGAGTTTCTTCATCACCACAGCCTTCTCCTGTATATCAATCTGCC TGGATGGGGGTTCCAGGTCAGGTATCAATGGCTGACATTGTGAAAATGGGTAGGCCACAAAATAAGGCATCAGTCATACTGCCTCACCAAAGTGTTAATC ATCACCGTGCTGCAGCTTCTCTTTTGGCAGCATCACACAATGATTTTCATTCATCAGAAAATTATGCTTCCAAGGTGGTGGAAATAACTGCAGAACCAGA AATGGCTACAAGCCAGCATAACCATTCTAACGATGAATGGCCATCGATTGAGCAGCCAACAGCTGCTATTACATCCTCTGTTCGGGACGTTCCTGCAGAT TCGGAGTTGTATGGAGATCTATCCAACTTGCCTCTGGATAGAGGTAGTCAGCATGTCAAGTCCCAGTTAGATGATCAAACAGCAGAAGATGCTCATGTTG AATCTTTCGATGGAAACCATGTTGGACCTGCTTCTGTATCTACTAGAAATACGCAGGAGGATGGTTCTGGAGGTTCATCTCTTTTTGATAATGACGTGTA TGAAAACATTAATTCCTACCAGTCTGACAGTCTTGCTTTTGAGAATAATGAAGCTGAAGATGGGACTTCATCAGTAGCAGCTAACTTACAGCACCTAAGT TTGCAGAATGATGATCAGGGTGTGCAGCCTGAAGAGAATAATCCTTCTGTAATAATTCCAAATCACCTGCAAGTTCATGCTCAAGAATGCTCACACCTGA GCTTTGGGAGTTTTGGATCTGGCATGAATTCTGCTTTTTCTGGGCAATTTGCATCAATGCCCATAAATAAAAGCTTGGAGGAGACATCTGAAGTGGTAGA TGCTTTATCAACCGGACATTCAGAAGCTAGAAATCCTGAATATTATGGGGATGAGCATCTCAGAAATGCAGTAGATGAAAGTTTGGTACATAGAGCTGGC GTGAGTGCTACAAATTACGATTCTTCTTCAGTTCCACAGTCAGAGACTTTGAAGGAGGAGACATCTGAAGCAACTCAAGGAAATCAATATGCATTTCCTT CATCTACACCTGGTTATAGCTATGAAAACACTCAACAGCTGAATGTTGCATTTAATAACCCACAGACAAGCACTCAGATGCAGAATATTGCTCCTTTCTC GAGTGTAATGCAGGCATATACAAATTCTATGCCAAGCGCTTTGTTGGCCTCAACTGTTCAGGCTGGGAGGGAGACTGATCTTCCATACTCACCCTTCCCT GTGACGCAATCACTGCCCACAAAATACAGCAATGCAGCTACTTCTATTAGTGGTCCAAGCATTTCCATGTCAGAGGCTTTGAGAGCAGGTGGTGTTTCTA CACCTCAGCCAACTCCTCAGACTCTTCCTGGTGCCAACATTGCCACAGGACCTGCTCTTCCACAACACCTTGCTGTGCATCCTTATCAACAGCCTACCCT TCCTTTGGGACATTTTGCCAACATGATCAGCTACCCCTTCATGGCTCAGAGCTACACATATATGCCATCAGCCTTCCAGCAGACTTTTGCTGGTAATAAC TCATACCATCAGTCGCTGGCAGCAGTGCTTCCTCAATACAAGAACAGTGTTTCTGTAAGCAGCTTGCCTCAGTCTGCTGCTGTTGCTTCTGGGTATGGAT TCGGGAGTTCCACCAGCATTCCTGCAGGAAACTTTCCTCTGAATGCACCCACTGCCCCTGCAGGCACAACAATAGGCTATGATGATATTTTAGGTTCTCA ATACAAGGATGCCAGCCACTTGATGTCACTTCAGCAGAATGAGAATTCAGCCATGTGGCTGCATGGGCCTGGATCGCGAACAATGTCTGCCGTCCCTGCC AGCACATATTACAGCTTCCAGGGGCAGAATCAGCAGCCTGGTGGATTTCGGCAAGGTCAGCAACCATCCCAGCATTTTGGGGCTCTGGGGTACCCAAATT ATTATCATTCACAAACGGGGATGTCTTTGGAACATCAGCAGCAGCAAAACTCAAGGGACGGGTCCCTAGGTGGTTCTCAAGGCCAACCTTCAAAGCAGGC TCAACAGTTATGGCAAAACAGCTACTAA
AA sequence Show only first row Show all	>Potri.011G078800.3 pacid=42781918 polypeptide=Potri.011G078800.3.p locus=Potri.011G078800 ID=Potri.011G078800.3.v4.1 annot-version=v4.1 MSGRGGGGGGGGVNNNNGKGNTGISGIPAASRKMVQSLKEIVNCPEPEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKREKKKENKDSTDFRSRGASNI SNRGGRGGADRYGRGGPGRSAYFNSNESSTFHSKPAYKKENGTNAYIDPFPSASGIAGNNINWQPPSHSDSVAAENKMSTIGAGDGVSSSPQPSPVYQSA WMGVPGQVSMADIVKMGRPQNKASVILPHQSVNHHRAAASLLAASHNDFHSSENYASKVVEITAEPEMATSQHNHSNDEWPSIEQPTAAITSSVRDVPAD SELYGDLSNLPLDRGSQHVKSQLDDQTAEDAHVESFDGNHVGPASVSTRNTQEDGSGGSSLFDNDVYENINSYQSDSLAFENNEAEDGTSSVAANLQHLS LQNDDQGVQPEENNPSVIIPNHLQVHAQECSHLSFGSFGSGMNSAFSGQFASMPINKSLEETSEVVDALSTGHSEARNPEYYGDEHLRNAVDESLVHRAG VSATNYDSSSVPQSETLKEETSEATQGNQYAFPSSTPGYSYENTQQLNVAFNNPQTSTQMQNIAPFSSVMQAYTNSMPSALLASTVQAGRETDLPYSPFP VTQSLPTKYSNAATSISGPSISMSEALRAGGVSTPQPTPQTLPGANIATGPALPQHLAVHPYQQPTLPLGHFANMISYPFMAQSYTYMPSAFQQTFAGNN SYHQSLAAVLPQYKNSVSVSSLPQSAAVASGYGFGSSTSIPAGNFPLNAPTAPAGTTIGYDDILGSQYKDASHLMSLQQNENSAMWLHGPGSRTMSAVPA STYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNYYHSQTGMSLEHQQQQNSRDGSLGGSQGQPSKQAQQLWQNSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29350			Kinase-related protein of unkn...		Potri.011G078800 [exp]	0	1
AT5G67530		ATPUB49	plant U-box 49 (.1)		Potri.005G148900 [exp]	2.00	0.7877
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	4.00	0.7370
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	4.12	0.8054
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	6.00	0.7487
AT5G07900			Mitochondrial transcription te...		Potri.003G190400 [exp]	12.44	0.7499
AT5G41190			unknown protein		Potri.003G124700 [exp]	13.85	0.7754
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.015G082500 [exp]	18.49	0.6254
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	23.91	0.7035
AT1G23280			MAK16 protein-related (.1)		Potri.012G085300 [exp]	24.00	0.7339
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	26.73	0.7212

Compare expression of checked genes

Potri.011G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.