Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29810 201 / 3e-67 Transcriptional coactivator/pterin dehydratase (.1) AT5G51110 96 / 1e-25 Transcriptional coactivator/pterin dehydratase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352800 [exp] 235 / 1e-80 AT1G29810 224 / 3e-75 Transcriptional coactivator/pterin dehydratase (.1) Potri.012G112400 [exp] 94 / 6e-25 AT5G51110 239 / 2e-80 Transcriptional coactivator/pterin dehydratase (.1.2) Potri.015G110500 [exp] 90 / 1e-23 AT5G51110 229 / 2e-77 Transcriptional coactivator/pterin dehydratase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022731 [exp] 96 / 1e-25 AT5G51110 251 / 5e-85 Transcriptional coactivator/pterin dehydratase (.1.2) Lus10014182 [exp] 94 / 9e-25 AT5G51110 246 / 3e-83 Transcriptional coactivator/pterin dehydratase (.1.2) Lus10004540 [exp] 53 / 3e-09 AT1G29850 197 / 1e-65 double-stranded DNA-binding family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01329 [poplar] [flax] Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Representative CDS sequence Show only first row Show all	>Potri.011G078900.2 pacid=42781575 polypeptide=Potri.011G078900.2.p locus=Potri.011G078900 ID=Potri.011G078900.2.v4.1 annot-version=v4.1 ATGGAAGATTTGGCTGCAAAGAAGTGTGTGCCATGCAACTCAAAGGATCTACAAGCCATGACTGAAGAAAGTGCAAATGACCTTCTATCGAAGGTTGCTG GGTGGAATTTGGTGAATGAAAATGGTACACTAAAGCTGAATCGTTCATGGAAAGTAAAGAGTTTCACTAAAGGGCTGGAACTATTCAAGCTTGTTGGGAA TGTTGCTGAAGCAGAAGGTCACCATCCGGATCTTCATCTGGTTGGATGGAACAATATAACAATCGAGATATGGACTCATGCAGTGGGTGGACTAACGGAA AACGACTTCATACTTGCTGCTAAGATAAATGGGCTTAACCTGCACCACCTACTGAGGAAGAAGGCTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.011G078900.2 pacid=42781575 polypeptide=Potri.011G078900.2.p locus=Potri.011G078900 ID=Potri.011G078900.2.v4.1 annot-version=v4.1 MEDLAAKKCVPCNSKDLQAMTEESANDLLSKVAGWNLVNENGTLKLNRSWKVKSFTKGLELFKLVGNVAEAEGHHPDLHLVGWNNITIEIWTHAVGGLTE NDFILAAKINGLNLHHLLRKKAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	0	1
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	1.41	0.8998
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	2.44	0.8849
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Potri.009G134200 [exp]	4.00	0.7956
AT1G15780			unknown protein		Potri.003G025200 [exp]	4.58	0.8221
AT3G42050			vacuolar ATP synthase subunit ...		Potri.019G047800 [exp]	4.58	0.8564
AT4G10610		ATRBP37, RBP37,...	RNA-BINDING PROTEIN 37, CTC-in...		Potri.011G152700 [exp]	7.61	0.7716
AT1G65780			P-loop containing nucleoside t...		Potri.004G077800 [exp]	7.74	0.7997
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.014G151700 [exp]	8.24	0.8378
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	10.19	0.8003
AT4G15563			unknown protein		Potri.008G204800 [exp]	10.48	0.8339

Compare expression of checked genes

Potri.011G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.