Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KCO2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18160 436 / 2e-151 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 395 / 6e-135 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT4G01840 356 / 2e-120 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT5G55630 196 / 7e-59 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT5G46360 181 / 2e-54 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2) AT1G02510 181 / 8e-54 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352500 [exp] 661 / 0 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.014G113700 [exp] 396 / 2e-136 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G187600 [exp] 392 / 5e-135 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.005G203000 [exp] 326 / 6e-109 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 314 / 5e-104 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.001G366800 [exp] 197 / 2e-59 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004600 [exp] 196 / 8e-59 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 187 / 1e-55 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 165 / 2e-47 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015265 [exp] 409 / 5e-135 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004611 [exp] 377 / 4e-128 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004538 [exp] 321 / 4e-107 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004525 [exp] 288 / 2e-92 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10001912 [exp] 180 / 1e-52 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004417 [exp] 162 / 9e-46 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 146 / 1e-41 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 109 / 4e-27 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10007670 [exp] 43 / 0.0004 AT4G32650 724 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Potri.011G079100.1 pacid=42781983 polypeptide=Potri.011G079100.1.p locus=Potri.011G079100 ID=Potri.011G079100.1.v4.1 annot-version=v4.1 ATGGAGAAAGAGCCTTTACTTCCATATGTAAGCCCAAGAAAGAGAACACCACAACCACCCCCGCTACTTTGCCCTCTCCCTGAAGACGATGAAATCTCTT TACCTCTCCCTCTAACTCCTTCTGAACTCAAAGACCGCCTTATTTTTGGCCCATCTTCTTCTTCTCCAGGAGACCGGTCTCCTCTTGTTGAAGCCTTAAC GTTTTCTCTCAATTCACCAAGACCCTCCTCTTCTAATCAAGATTTCAACTCATTCCTTGATTCTCCTGAGTTACAGCAACATCATCATCATCAATCTTAT TTAGTTGATCCTAATTACCCATGGACGAAAACCAATCTTCACAGGTCAAAAACTGCACCTGCTATGGCTGTCATCAATGATTTTAACCAACCTGTGATTG CCAAGCCAAGATTTGGTTCCCAATCAATTATAGGTCAAGCTTTTTTGCTCTTGGTATTGTATCTGTCTCTCGGTGTGCTTATATATTCTCTTAATCGTGA CAAGTTTGAAGGAATTGAAACGCACCCAGTTGCGGATGCTTTGTATTTTTGTATTGTGACTATGTGTACTATTGGCTACGGGGACATTACTCCTAATAGC ACTGCTACCAAGTTGTTTTCCATTTTATTTGTGTTGGTTGGTTTTGGTTTTATCGATATTTTTCTTTCTGGGATGGTTAGTTATGTGCTTGATCTGCAAG AGAGTCATTTGTTGAGGAATGTTAAGAGAGGGGTTGAAAAGGAGTCTGCTGGATCATATATAATCGATGTGAAGAAAGGGAGGATGAGGATAAGAATGAA GGTAGGATTGGCATTAGGTGTTGTGGTTCTTTGTATCGGAGTTGGTGTTGGTTTCATGCACTTTGTCGAGAGGCTAGGATGGTTGGATTCACTTTATCTA TCCGTTATGTCTGTTACAACAGTTGGATATGGTGATAGGGCATTCACCTCATTGGCTGGTCGTATTTTCGCTTCCATTTGGTTGCTTGTGTCGACACTTG CTGTTGCTCGAGCATTTTTGTATTTGGCCGAGGCAAGAGTTGATAAGCGGCATAGGAGGATGGCAAAGTGGGTGCTTGGTCAACACATGACTGTCTCGGA GTTCCTTGCTGCAGACATTGACAACAATGGGTTTGTGAGCAAGTCAGAGTACGTAATATACAAGCTCAAGGAGATGGGAAAGATATCAGAGAAAGATATT CTGCAGATATGTCAGCAGTTTGAGAGGCTAGACACTGGCAACTGTGGGAAGATTACACTTGCTGATCTCATGGAAAGCCACCCTTGA
AA sequence Show only first row Show all	>Potri.011G079100.1 pacid=42781983 polypeptide=Potri.011G079100.1.p locus=Potri.011G079100 ID=Potri.011G079100.1.v4.1 annot-version=v4.1 MEKEPLLPYVSPRKRTPQPPPLLCPLPEDDEISLPLPLTPSELKDRLIFGPSSSSPGDRSPLVEALTFSLNSPRPSSSNQDFNSFLDSPELQQHHHHQSY LVDPNYPWTKTNLHRSKTAPAMAVINDFNQPVIAKPRFGSQSIIGQAFLLLVLYLSLGVLIYSLNRDKFEGIETHPVADALYFCIVTMCTIGYGDITPNS TATKLFSILFVLVGFGFIDIFLSGMVSYVLDLQESHLLRNVKRGVEKESAGSYIIDVKKGRMRIRMKVGLALGVVVLCIGVGVGFMHFVERLGWLDSLYL SVMSVTTVGYGDRAFTSLAGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWVLGQHMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKISEKDI LQICQQFERLDTGNCGKITLADLMESHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.011G079100 [exp]	0	1	KCO2.1
AT2G37840			Protein kinase superfamily pro...		Potri.016G104900 [exp]	2.23	0.7700
AT3G59670			unknown protein		Potri.007G051100 [exp]	15.32	0.7317
AT2G24530			unknown protein		Potri.003G187400 [exp]	15.96	0.7446
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	20.73	0.7503
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	23.40	0.7355
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.014G001000 [exp]	28.91	0.6941
AT5G26160			unknown protein		Potri.006G224200 [exp]	37.08	0.6919
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.016G072600 [exp]	42.00	0.7256
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	42.48	0.6554
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	45.71	0.7166

Compare expression of checked genes

Potri.011G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.