Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Lhcb1-1,Pt-LHB1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34430 480 / 5e-174 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1) AT1G29930 478 / 4e-173 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT1G29920 476 / 2e-172 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 476 / 2e-172 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT2G34420 470 / 4e-170 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT2G05070 424 / 8e-152 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) AT2G05100 421 / 2e-150 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT3G27690 420 / 4e-150 LHCB2.3, LHCB2:4 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) AT5G54270 342 / 2e-119 LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, light-harvesting chlorophyll B-binding protein 3 (.1) AT4G10340 193 / 9e-61 LHCB5 light harvesting complex of photosystem II 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G239200 [exp] 522 / 0 AT2G34430 484 / 2e-175 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239300 [exp] 521 / 0 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.002G189300 [exp] 471 / 1e-170 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.014G165100 [exp] 429 / 6e-154 AT2G05100 507 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) Potri.002G221400 [exp] 426 / 1e-152 AT2G05070 499 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) Potri.001G407100 [exp] 348 / 7e-122 AT5G54270 478 / 2e-173 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.011G126700 [exp] 345 / 4e-121 AT5G54270 446 / 3e-161 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.019G063101 [exp] 202 / 3e-64 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.005G258600 [exp] 199 / 2e-62 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008191 [exp] 468 / 3e-169 AT1G29910 452 / 5e-163 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10042219 [exp] 461 / 2e-166 AT1G29930 444 / 1e-159 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10008594 [exp] 460 / 6e-166 AT1G29930 445 / 4e-160 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10027966 [exp] 459 / 1e-165 AT1G29910 446 / 2e-160 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10001169 [exp] 420 / 3e-150 AT3G27690 484 / 1e-175 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10001741 [exp] 419 / 8e-150 AT3G27690 481 / 1e-174 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10007362 [exp] 381 / 2e-135 AT1G29930 370 / 5e-131 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10038490 [exp] 350 / 4e-123 AT1G29910 337 / 2e-118 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10037875 [exp] 347 / 1e-121 AT5G54270 460 / 3e-166 light-harvesting chlorophyll B-binding protein 3 (.1) Lus10038575 [exp] 343 / 7e-120 AT5G54270 462 / 9e-167 light-harvesting chlorophyll B-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.011G079500.1 pacid=42780768 polypeptide=Potri.011G079500.1.p locus=Potri.011G079500 ID=Potri.011G079500.1.v4.1 annot-version=v4.1 ATGGCAGCAGCAACAATGGCCCTCTCCTCCCCTGCATTCGCTGGAAAGGCAGTGAAGCTCTCCCCTTCTTCCCCTGAGCTCATGGGCAATGGCCGTGTCT CCATGAGGAAAACCACCAAGCCTGTTTCCTCTGGAAGCCCATGGTACGGTCCAGACCGTGTTAAATACCTGGGTCCTTTCTCCGGTGAGCCCCCATCCTA CTTGACCGGTGAGTTCCCTGGTGATTATGGCTGGGACACTGCTGGGCTCTCTGCTGACCCAGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTCATCCAC TCCAGGTGGGCCATGCTTGGAGCCCTTGGATGTGTCTTCCCCGAGCTCTTGTCCCGCAACGGTGTCAAATTCGGTGAGGCTGTGTGGTTCAAGGCTGGGG CCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGATCCACGCACAAAGCATCTTGGCCATTTGGGCTACACAAGTGATCTTGAT GGGTGCTGTTGAGGGTTATAGAATTGCTGGTGGGCCACTCGGAGAGATCACTGACCCGATCTACCCAGGTGGAAGCTTTGACCCGTTGGGTCTGGCTGAC GACCCAGAGGCATTCGCTGAGTTGAAGGTAAAGGAACTCAAGAATGGTAGACTGGCTATGTTCTCTATGTTCGGATTCTTTGTCCAAGCCATTGTTACCG GAAAGGGACCATTGGAGAACTTGGCTGACCACCTTGCTGATCCCGTCAACAACAACGCCTGGGCATATGCCACCAACTTCGCCCCCGGAAAGTGA
AA sequence Show only first row Show all	>Potri.011G079500.1 pacid=42780768 polypeptide=Potri.011G079500.1.p locus=Potri.011G079500 ID=Potri.011G079500.1.v4.1 annot-version=v4.1 MAAATMALSSPAFAGKAVKLSPSSPELMGNGRVSMRKTTKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH SRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLAD DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFAPGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.011G079500 [exp]	0	1	Lhcb1-1,Pt-LHB1.2
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.018G065300 [exp]	1.00	0.9920
AT1G58684			Ribosomal protein S5 family pr...		Potri.001G256800 [exp]	2.82	0.9842
AT1G74730			Protein of unknown function (D...		Potri.012G070600 [exp]	3.16	0.9861
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.018G027600 [exp]	4.24	0.9857	Pt-PSAK.1
AT2G30570		PSBW	photosystem II reaction center...		Potri.002G044300 [exp]	4.47	0.9840
					Potri.001G056750 [exp]	4.89	0.9715
AT1G55260			Bifunctional inhibitor/lipid-t...		Potri.003G217000 [exp]	5.47	0.9677
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.003G020400 [exp]	6.48	0.9748
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.011G126700 [exp]	7.34	0.9735
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.001G407100 [exp]	10.00	0.9734	Lhcb3-1,LHCB3.2

Compare expression of checked genes

Potri.011G079500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.