Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34460 371 / 5e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 111 / 3e-27 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G31530 65 / 1e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 57 / 4e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18660 55 / 2e-08 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G18810 53 / 2e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46780 50 / 1e-06 PTAC16 plastid transcriptionally active 16 (.1) AT1G09480 45 / 4e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33590 44 / 5e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32100 44 / 6e-05 ATPRR1 pinoresinol reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G150300 [exp] 110 / 7e-27 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 99 / 8e-23 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 99 / 8e-23 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G204900 [exp] 67 / 2e-12 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G037000 [exp] 60 / 6e-10 AT3G46780 503 / 2e-175 plastid transcriptionally active 16 (.1) Potri.001G244800 [exp] 59 / 2e-09 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.006G086800 [exp] 52 / 2e-07 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 51 / 5e-07 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G061200 [exp] 47 / 7e-06 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040884 [exp] 394 / 2e-138 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 387 / 8e-136 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 107 / 9e-26 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 104 / 1e-24 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016502 [exp] 59 / 1e-09 AT3G46780 533 / 0.0 plastid transcriptionally active 16 (.1) Lus10040768 [exp] 58 / 4e-09 AT3G46780 540 / 0.0 plastid transcriptionally active 16 (.1) Lus10037912 [exp] 50 / 1e-06 AT5G18660 577 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019734 [exp] 49 / 3e-06 AT1G09480 286 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022632 [exp] 48 / 4e-06 AT4G35250 640 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007308 [exp] 49 / 5e-06 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13460 [poplar] [flax] NAD_binding_10 NAD(P)H-binding
Representative CDS sequence Show only first row Show all	>Potri.011G079600.1 pacid=42781630 polypeptide=Potri.011G079600.1.p locus=Potri.011G079600 ID=Potri.011G079600.1.v4.1 annot-version=v4.1 ATGGCCACTGCTTTGGTCATAAAAACTCGTCTTCTCTCTGCACCACGCCTCCATCACCATCACCACTGTTACCCTCTTCTCTTCTCTACCACATCCCCCA AACCTCCCAAGTCTCAATCCCTCAAATCCATCAAGATGGAAAGTGGAAATGAAATTACGGAAGAAGCTAAAGAGAATGTGAATCAGAAGAAGAAGAAAAT ATTTGTGGCTGGAGCCACTGGAAGTACTGGGAAAAGGATTGTTGAACAGCTTCTAGCCAAGGGTTTTGAGGTCAAGGCTGGTGTTAGGGATTTAGACAAG GCCAAAACTATTCTTTCTGAACACAACCCATCTCTTCAAATTGTGACAGCCGATGTAACTAAGGGGTCTGACAAGCTAGTACAGGCCATAGGGGATGATT CCGAGGCTGTAATATGTGCCACTGGGTTTCGGCCTGGCTGGAACTTGTTTGCTCCATGGAAGGTTGATAATTTAGGCACTGTGAACCTTGTTGAAGCTTG CCGTAAACTTGGTGTGAAAAGATTCATTCTAATAAGCTCAATTTTAGTCAATGGAGCTGCAATGGGACAGATACTCAATCCAGCTTACATTTTTCTCAAT GTTTTTGGGCTAACCCTAGTGGCGAAGCTTCAGGCAGAGAATTACATCAGGAAGTCTGGCATAAACTACACTATAGTTAGACCAGCTGGTTTGAAAAATG AACCACCCTCAGGAAATCTTGTAATTGAGCCAGAGGATACTCTTTATGAAGGTATCATATCAAGGGATGTGGTTGCGGAAGTTGCTGTTGAGGCACTAGG TCTTCCGGAATCATCTTACAAAGTCGTGGAAATAGTCTCTCGTGCTGACGCTCCGAAGCGTACATACGAGGATCTTTTTGGTTCTATCAAGCAAAAGTGA
AA sequence Show only first row Show all	>Potri.011G079600.1 pacid=42781630 polypeptide=Potri.011G079600.1.p locus=Potri.011G079600 ID=Potri.011G079600.1.v4.1 annot-version=v4.1 MATALVIKTRLLSAPRLHHHHHCYPLLFSTTSPKPPKSQSLKSIKMESGNEITEEAKENVNQKKKKIFVAGATGSTGKRIVEQLLAKGFEVKAGVRDLDK AKTILSEHNPSLQIVTADVTKGSDKLVQAIGDDSEAVICATGFRPGWNLFAPWKVDNLGTVNLVEACRKLGVKRFILISSILVNGAAMGQILNPAYIFLN VFGLTLVAKLQAENYIRKSGINYTIVRPAGLKNEPPSGNLVIEPEDTLYEGIISRDVVAEVAVEALGLPESSYKVVEIVSRADAPKRTYEDLFGSIKQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34460			NAD(P)-binding Rossmann-fold s...		Potri.011G079600 [exp]	0	1
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	2.00	0.9648
AT1G55140			Ribonuclease III family protei...		Potri.001G200300 [exp]	3.00	0.9628
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	4.00	0.9658
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G057800 [exp]	6.32	0.9464
AT3G46630			Protein of unknown function (D...		Potri.014G023400 [exp]	9.74	0.9558
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	13.26	0.9613
AT3G13227			serine-rich protein-related (....		Potri.018G078900 [exp]	13.56	0.9526
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	15.68	0.9540
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.005G095300 [exp]	16.12	0.9444	Pt-MST2.1
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Potri.017G073000 [exp]	19.59	0.9425

Compare expression of checked genes

Potri.011G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.