Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-I.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46290 780 / 0 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 469 / 3e-162 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT2G04540 270 / 2e-85 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131500 [exp] 841 / 0 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 694 / 0 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 679 / 0 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.006G138000 [exp] 483 / 1e-167 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.018G062900 [exp] 472 / 6e-163 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.002G219500 [exp] 259 / 2e-81 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025390 [exp] 790 / 0 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10040883 [exp] 788 / 0 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 748 / 0 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001814 [exp] 694 / 0 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 688 / 0 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 589 / 0 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10034886 [exp] 490 / 5e-170 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 455 / 1e-157 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10014622 [exp] 275 / 4e-87 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 258 / 4e-80 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00109 [poplar] [flax] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02801 [poplar] [flax] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G079700.1 pacid=42781999 polypeptide=Potri.011G079700.1.p locus=Potri.011G079700 ID=Potri.011G079700.1.v4.1 annot-version=v4.1 ATGGAAGCCCTGCAATCTCTATATCTCTCTTCATCTCCGTTAAACCCACTTCACCAAAAATCTCACAATGCAACAAAGCCCCCACCTGAGAGAATCTCAT TCATCAAAGCATCATCATCCTCCACCGTTTCAGCTCCAAAACGAGAGAAAGACCCCAAAAAGAGGGTTGTCATAACGGGCATGGGATTGGTCTCTGTCTT TGGTAATGACGTAGATGCTTATTATGATAAATTGCTTGCTGGTGAAAGTGGGATTGGAACCATTGACCGCTTTGATGCTTCTAAGTTTCCTACCCGCTTC GCTGGGCAGATCCGGGGCTTTAATGCACAAGGCTATATTGATGGGAAAAATGATAGGAGGCTTGATAATTGCTTGAGGTATTGCATTGTTGCTGGCAAGA AGGCTCTTGAAGATGCGGATCTTGGAGGGAATAATCTATCTAAGATTGATAAGGAGAAAGCTGGTGTGCTTGTTGGAACAGGGATGGGTGGTCTTACAGT CTTTTCTGATGGTGTTCAATCTTTAATTGAGAAAGGACACAGAAAAATTACCCCATTTTTTATTCCTTATGCTATAACAAACATGGGCTCTGCCTTGCTT GGAATTGAACTTGGTTTCATGGGTCCAAATTACTCGATTTCAACTGCTTGTGCTACTTCTAATTATTGCTTCTATGCTGCTGCCAATCACATTCGCCGAG GTGAGGCAGATATGATGATTGCTGGTGGAACAGAAGCTGCTATCATTCCTATTGGTTTGGGAGGTTTTGTTGCATGCAGGGCCTTATCACAACGAAATGA TGATCCAAAAACTGCATCTAGGCCGTGGGACAGAGATCGAGATGGTTTTGTTATGGGTGAAGGTGCAGGAGTGTTGGTAATGGAGAGCTTGGAACATGCA ATGAAACGAGGCGCACCAATCATTGCTGAGTACCTGGGAGGTGCTGTTAACTGTGATGCTTATCACATGACTGATCCAAGAGCTGATGGTCTTGGGGTGT CTTCATGCATTGAGAGAAGTCTCGAAGATGCCGGCGTGTCTCCTGAGGAGGTTAACTACATAAATGCACATGCAACTTCCACTCTTGCTGGTGACCTTGC TGAGATAAATGCTATAAAGAAGGTATTTAAGAACACTTCAGAGATCAAAATCAATGCAACCAAGTCTATGATTGGACATTGCCTTGGTGCTTCTGGAGGT TTGGAAGCTATTGCAACTGTGAAGGCCATAACAACAGGATGGCTGCATCCTAGTATTAACCAATTTAATCCAGAGCCCTCAGTTGAGTTTGATACTGTTG CCAACAAAAAGCAACAACATGCAGTGAATGTTGCTATTTCAAATTCATTTGGATTTGGTGGACACAACTCTGTCGTGGCCTTTTCTGCATTCAAGCCTTG A
AA sequence Show only first row Show all	>Potri.011G079700.1 pacid=42781999 polypeptide=Potri.011G079700.1.p locus=Potri.011G079700 ID=Potri.011G079700.1.v4.1 annot-version=v4.1 MEALQSLYLSSSPLNPLHQKSHNATKPPPERISFIKASSSSTVSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYDKLLAGESGIGTIDRFDASKFPTRF AGQIRGFNAQGYIDGKNDRRLDNCLRYCIVAGKKALEDADLGGNNLSKIDKEKAGVLVGTGMGGLTVFSDGVQSLIEKGHRKITPFFIPYAITNMGSALL GIELGFMGPNYSISTACATSNYCFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPKTASRPWDRDRDGFVMGEGAGVLVMESLEHA MKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIERSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTSEIKINATKSMIGHCLGASGG LEAIATVKAITTGWLHPSINQFNPEPSVEFDTVANKKQQHAVNVAISNSFGFGGHNSVVAFSAFKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	0	1	Pt-I.1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	2.64	0.9300
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	2.82	0.9287	PtrPht3-2
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	3.00	0.9258
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.009G026800 [exp]	4.47	0.9154
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	7.74	0.8973
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	8.83	0.8969	PtrAtpB_1,ATP.1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.010G126600 [exp]	9.59	0.8654
AT3G08640			Protein of unknown function (D...		Potri.016G140700 [exp]	13.63	0.8586
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	13.85	0.8854
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	15.49	0.8638

Compare expression of checked genes

Potri.011G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.