Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 95 / 3e-20 GIP1 GBF-interacting protein 1 (.1) AT1G55820 94 / 1e-19 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 66 / 6e-11 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT4G18150 57 / 6e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 48 / 3e-05 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 47 / 8e-05 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 47 / 8e-05 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370900 [exp] 877 / 0 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 175 / 2e-45 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 158 / 6e-40 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 69 / 8e-12 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 65 / 1e-10 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.002G059300 [exp] 58 / 3e-08 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 52 / 2e-06 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 51 / 3e-06 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036414 [exp] 152 / 1e-37 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 151 / 2e-37 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015640 [exp] 68 / 2e-11 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10037658 [exp] 60 / 9e-09 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10025382 [exp] 54 / 5e-07 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 53 / 8e-07 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 47 / 2e-06 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 50 / 5e-06 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 45 / 0.0003 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF06972 [poplar] [flax] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Potri.011G079800.4 pacid=42781938 polypeptide=Potri.011G079801.1.p locus=Potri.011G079800 ID=Potri.011G079800.4.v4.1 annot-version=v4.1 ATGAGCGATAGCGGCGGCAACTCTATAACGATCCCGGATAATGTCAAGAAAACTATACAAAGCATAAGAGAAATCACAGGGAAAAAACACAGTGATGAGG ATGTATACTCTGTTCTTCAAGACTGTTCTATGGATCCTGATGACACTGCGCAGAAGCTCCTTTATTTAGATACATTTCATGAAGTCAAGAGGAAATGTGA TTGGAGAAAGGGGACTCGAGGAAGAGGAACTAGGGGTGGTCAAGGAAACTTTTCTGATGCTGTTGGTGGGAGGAATGTGGCTACTCGAAGGGAAAATGGA GTTGTTCGCATGGCAGACAGAAGTGCTTCGAACTCTTTACACTCTGTGCAGAAAAAAAATAACACTGCAGTGAATCCTGTGACAAAAGATTTAACTACCA CTTCCTGTGACCCTTCAACTTTATCCAATAGGAGTTCTATTCGCAGCCATGGTCCGCAGCTGCCTGCTGCTGCTGATGCAGGTAGTTCAGCTCACACTGT GAAGTCAGATGCTTTCCTACCACCTGCAGCATGTACAACATTGCCTATGCAAGTTTCTGTCTCTGTAATGCTATCTAAGGAACGAAAGTCCACAACATTT TTTAATGGCCTCCCAGCTTCTACCACTCTAGCATCTGTATCTGGCTCTGTATCTTCTTCTTCAGACCCCATACTGGCCACTTCTATGACTAGAAATCCTG GTGCTGTTGGTACAATTAAATGCGAAGTGGGTTGCCAGCGGAAAGCTGCTGAACAGAATAATATTCAAGGAAACAAAAAAATTTCTCTGAGTAAATCAAA GGCAGTTGGAAATAATCAGTTGTCTGAATCTCTGCAGCCCTCGACTTTGTCTACATATAATGATTCTTTGGTTGTCAGGTCTTCTGCTAATGATAGCCAT TCATCAGAGGAGTTGGCTAAATCTTTAAAAACAGCAGTCTTGTCTGAAGATGCTCAAGCTAAAGTCAGTTCTCAGTTGCTGCCAGAACCATCCATCACTA TTGGACATGTTAAATTTCCAACTCACTTTAAAGTTCCTGAAGCGTTAAAAAGTAGTTTAACTTTTGGAAGCTTTGAATCAAATTCTGGACCAGGAAAGGA ATATATCAATGGTGGTTTGACTTTTGGAAGCTTTGATTCTAATTCTGGACCAGAAACAAAATGTAGCAATGCTATTGATGGTGACATAAACTCTACGCTT GCTGTTGAGCTGACACATTCAACTGTTGAAAATGCCAGACCTTCTAGCAATGATAGTGGATCGTCGCCTATGCAAGTTGATCATTCTTATCAACCAGAGT CTCCTCAACCTGTGGTTGAAAAAGTGCTAATATCAGAGGATAATGATGCACCGGGTGCAGACTCGAAGGTTGTTCAATCAAAGCAGGATGCAATGTTGCT TCCAGAATGCCATCAGAACTCAACTGTTCAAATTTCCCCAAGCTATGGTTTTGGGATCATGCCACCCTTGCAGGCTGCTCACCCTGTACCATTTATAGGA CATGAGACTCAGGCACCAGATGTTTCTCAACTTTCAGGCTTTGTTGGTGAGAATTCTATGGCTACATCGACTTCAAGTCTGAGTCAATCAATGCAGCACT CTGTTGCTGCTTCTCCGCACCCACTTCTTTTCAGGCCACCATATCCTCCTAACTATCTTCAGTATGGGCATTACTTCAATCCATATTTTTTGCCACCAAT GCACCAATTCTTGAGCCACAATGGGCTTCCTCAACAGCCATCGACTGGCAATGCATTTCTTACATCAGCACCTGCTGCTGCTGGTGTCAAGTTCCCGCTC CCTCTTCCACAATTTAAGCCCGGAACTACTGCCAGAAACCCAACTCCAGTTGCACTCCCAACTTTATATGGATCATATGGCTCTTCCCCTATGGGCTTCA ATCCTGGTCCAGCTGTATCCTCTGGAAGCTCTGCTGGTAACGATGATCTATCAGCATTTCAGTTGAAGGAAAGAAATATCTACACTACAGGATCACTGAG CGAAGTTTCATCTTGGATTCCTCCACCTGGGCAAGATATATCCAGCTTGCAGCTCAGTTCCTTGTACCAACTTCACCCTCAGGGACAGCACCTCACCTTC TCTCCTCCACAGGCTGGGCATGGTACCTTTCCTGGATTTTACCCACCAGTGCAAACAATGGCTGCACCTTCAACTGTTAACCAACTCATGCAACAGTCAC AGGCTACGCCTGCAACTGTTGAACCTGTGGTACCCCCATCTGGTCCTTACCAGCAGTCTCAACTTACACAGATCAACTGGAACTCTTAA
AA sequence Show only first row Show all	>Potri.011G079800.4 pacid=42781938 polypeptide=Potri.011G079801.1.p locus=Potri.011G079800 ID=Potri.011G079800.4.v4.1 annot-version=v4.1 MSDSGGNSITIPDNVKKTIQSIREITGKKHSDEDVYSVLQDCSMDPDDTAQKLLYLDTFHEVKRKCDWRKGTRGRGTRGGQGNFSDAVGGRNVATRRENG VVRMADRSASNSLHSVQKKNNTAVNPVTKDLTTTSCDPSTLSNRSSIRSHGPQLPAAADAGSSAHTVKSDAFLPPAACTTLPMQVSVSVMLSKERKSTTF FNGLPASTTLASVSGSVSSSSDPILATSMTRNPGAVGTIKCEVGCQRKAAEQNNIQGNKKISLSKSKAVGNNQLSESLQPSTLSTYNDSLVVRSSANDSH SSEELAKSLKTAVLSEDAQAKVSSQLLPEPSITIGHVKFPTHFKVPEALKSSLTFGSFESNSGPGKEYINGGLTFGSFDSNSGPETKCSNAIDGDINSTL AVELTHSTVENARPSSNDSGSSPMQVDHSYQPESPQPVVEKVLISEDNDAPGADSKVVQSKQDAMLLPECHQNSTVQISPSYGFGIMPPLQAAHPVPFIG HETQAPDVSQLSGFVGENSMATSTSSLSQSMQHSVAASPHPLLFRPPYPPNYLQYGHYFNPYFLPPMHQFLSHNGLPQQPSTGNAFLTSAPAAAGVKFPL PLPQFKPGTTARNPTPVALPTLYGSYGSSPMGFNPGPAVSSGSSAGNDDLSAFQLKERNIYTTGSLSEVSSWIPPPGQDISSLQLSSLYQLHPQGQHLTF SPPQAGHGTFPGFYPPVQTMAAPSTVNQLMQQSQATPATVEPVVPPSGPYQQSQLTQINWNS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07660			Kinase-related protein of unkn...		Potri.011G079800 [exp]	0	1
AT2G03667			Asparagine synthase family pro...		Potri.010G157700 [exp]	2.82	0.8031
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	7.93	0.7552
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	8.48	0.7717
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	12.96	0.7456
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.017G036100 [exp]	13.11	0.8150
AT5G57280		RID2	root initiation defective 2, S...		Potri.018G049800 [exp]	13.41	0.7933
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	13.56	0.7577
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	16.91	0.7410
AT1G12150			Plant protein of unknown funct...		Potri.006G004100 [exp]	17.02	0.7520
AT1G02960			unknown protein		Potri.002G208058 [exp]	17.14	0.7680

Compare expression of checked genes

Potri.011G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.