Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29950 140 / 9e-41 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G00120 49 / 3e-07 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 47 / 5e-06 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 45 / 1e-05 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G01310 46 / 2e-05 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT4G36930 45 / 3e-05 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 43 / 6e-05 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 43 / 7e-05 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 43 / 9e-05 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G28800 42 / 0.0002 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191800 [exp] 50 / 4e-07 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G103300 [exp] 49 / 1e-06 AT5G50010 98 / 4e-23 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.007G108000 [exp] 48 / 2e-06 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 48 / 2e-06 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G048000 [exp] 47 / 3e-06 AT5G09460 106 / 7e-26 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.005G060900 [exp] 45 / 1e-05 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G120800 [exp] 45 / 1e-05 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.007G112800 [exp] 45 / 2e-05 AT5G09460 114 / 1e-28 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.005G138900 [exp] 44 / 2e-05 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004927 [exp] 202 / 2e-63 AT1G29950 126 / 6e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10040879 [exp] 199 / 2e-63 AT1G29950 130 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10004926 [exp] 188 / 1e-59 AT1G29950 130 / 4e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10033488 [exp] 49 / 1e-06 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 48 / 2e-06 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 48 / 2e-06 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029805 [exp] 45 / 2e-05 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10002213 [exp] 44 / 2e-05 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10024811 [exp] 44 / 4e-05 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018724 [exp] 44 / 4e-05 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G080000.1 pacid=42782135 polypeptide=Potri.011G080000.1.p locus=Potri.011G080000 ID=Potri.011G080000.1.v4.1 annot-version=v4.1 ATGCATAGTGATCGATACTTCCGCTCGAAAGAGGCAATGCCCCCACTTACAAATCAAGTTGACAATAATAACATGCATTTTCCAGTCGCAACTACTTTTG CTGCAGTTCAACCTCTAGCTGCAAAGCACTTGATGCCTGTGCATGGAATTGAATTTCAATCTTCAGAGATTTGTCCGAGGAATTTCATTATTTTTGATCA AGCTGATCACCGAAGCCAGGTTATGTACAATCCTGCAGTTGCCCACAATCATGGTGGTCCTGACTTTAATATCCATGCAACTTACATCCAAGAGAATTTT GAAAGGACAGACACCTACAATGTTGAAAGAGAAATTTCATCATCTCTGAAGGAAGATTCAGATGATATTGATGCATTAATGAGTTTGGAAGAGGAAGAAC CAGAAGAGTGTGATGGGGAAGAGGTCAGCACCGCACGCACCTGCAGAAATTATGGAAGTAGCTCCCCCGATTCTTGCTCCAGTTATGGTGCAAAACCCAT GAAAAATGGATCTTCTGTCCAGAAGTGCTCAAGCAGTGGTAGCAGCTCTAACAGTGAGAGGAAACGACAGAAAATGAAGACAATGGTGAAGACATTGAGA GGTATTGTACCCGGTGGCGACCAAATGAATACTGTTACTGTTCTAGATGAAGCTGTCAGGTACCTCAAATCTCTCAAAGTCGAAGTGCAAAAGCTTGGGG TTGGCAATTTCAAGAACTAA
AA sequence Show only first row Show all	>Potri.011G080000.1 pacid=42782135 polypeptide=Potri.011G080000.1.p locus=Potri.011G080000 ID=Potri.011G080000.1.v4.1 annot-version=v4.1 MHSDRYFRSKEAMPPLTNQVDNNNMHFPVATTFAAVQPLAAKHLMPVHGIEFQSSEICPRNFIIFDQADHRSQVMYNPAVAHNHGGPDFNIHATYIQENF ERTDTYNVEREISSSLKEDSDDIDALMSLEEEEPEECDGEEVSTARTCRNYGSSSPDSCSSYGAKPMKNGSSVQKCSSSGSSSNSERKRQKMKTMVKTLR GIVPGGDQMNTVTVLDEAVRYLKSLKVEVQKLGVGNFKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G080000 [exp]	0	1
AT3G14067			Subtilase family protein (.1)		Potri.001G167300 [exp]	2.00	0.7194
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.001G139500 [exp]	2.44	0.7052
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	7.68	0.7254
AT2G27900			unknown protein		Potri.009G002900 [exp]	11.83	0.7040
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	18.16	0.6962
AT5G07800			Flavin-binding monooxygenase f...		Potri.012G067500 [exp]	20.00	0.6873
AT3G06150			unknown protein		Potri.010G030900 [exp]	25.29	0.6566
					Potri.012G034400 [exp]	26.66	0.6873
					Potri.006G273733 [exp]	28.98	0.6957
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	31.93	0.6845

Compare expression of checked genes

Potri.011G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.