Plant FIBer expression Database

Potri.011G080300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18260 311 / 1e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028131
[exp]
332 / 1e-115 AT4G18260 306 / 8e-102 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Lus10042834
[exp]
246 / 5e-83 AT4G18260 230 / 2e-73 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info
Representative CDS sequence
>Potri.011G080300.2 pacid=42781475 polypeptide=Potri.011G080300.2.p locus=Potri.011G080300 ID=Potri.011G080300.2.v4.1 annot-version=v4.1
ATGGGAGAAGCAGAAGAAGAGGGAAAGAAGAGAAGAGTGATGGTGGAATCATTAGGATGGCTAACAGAATCATCAATTTTACCAAAGAAACATCGAGCCA
TAGAAGGAGTTGGTGCTTCTTCCATCGTTGAACTTAAAGCCCAACTCTATAAATCCCAAGAAGAAGCCAAGAAATCTAAAGATATCTCCCCTTCTGATCT
TGAATACCATCGCGCCAAGAAGATTATCCCTTCTCTCGACACCTTCTCCAAGAAAAACTCCGGCGTCGAATCCCGTGCCCACAAGGACAAGCTTGAGCTT
AAAGCAGTTAATGATGGGTCAGCTAGCTATGCTGCATTGGAGAGGAAGGCGGAGTTGTATGACAAGTTATTGAGAGGAGAGTTGTCTGATGAGGAAGAGA
ATGAGAAGTACTGTGTTGATTTTTTTAGGAAGGGTGTGGAACAAGATGAGTCGACGCGGCCTCGAGGGAATAATACTTCTGCTGCTGCACCCGTTGATGA
TGAAGGAAAAGTTGATGGTCACGGTGATGATTCTGTGTTATTCAATACCAAATTTGCTGGGCCGGGGCGGACAGCTGGAGCTGTGGACAAAGCTCAACAT
CATCGTTTAGTGAGAGAAGTTCATGAAGAAGCCAATCAAGCCAGAAAAAAGGTAGTGGAGCTCAAGTTGCATAGACAAGAGCAGGCAGCAGCTAAACATG
AGAAGCTCAAACAAGCATATCTTCGCAAAAAATTGGAGGAACTAAAAGCTGCATCTAATGCAAATCAGACGTGA
AA sequence
>Potri.011G080300.2 pacid=42781475 polypeptide=Potri.011G080300.2.p locus=Potri.011G080300 ID=Potri.011G080300.2.v4.1 annot-version=v4.1
MGEAEEEGKKRRVMVESLGWLTESSILPKKHRAIEGVGASSIVELKAQLYKSQEEAKKSKDISPSDLEYHRAKKIIPSLDTFSKKNSGVESRAHKDKLEL
KAVNDGSASYAALERKAELYDKLLRGELSDEEENEKYCVDFFRKGVEQDESTRPRGNNTSAAAPVDDEGKVDGHGDDSVLFNTKFAGPGRTAGAVDKAQH
HRLVREVHEEANQARKKVVELKLHRQEQAAAKHEKLKQAYLRKKLEELKAASNANQT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G18260 Cytochrome b561/ferric reducta... Potri.011G080300
[exp]
0 1
AT4G10925 Nuclear transport factor 2 (NT... Potri.003G141600
[exp]
2.23 0.8418
AT1G79200 unknown protein Potri.005G095700
[exp]
4.24 0.8452
AT1G65000 unknown protein Potri.013G078866
[exp]
8.36 0.8328
AT3G27100 unknown protein Potri.001G330400
[exp]
13.85 0.8266
AT5G44070 ATPCS1, ARA8, C... CADMIUM SENSITIVE 1, ARABIDOPS... Potri.014G195900
[exp]
14.00 0.8022
AT1G02140 MAGO, HAP1, MEE... MATERNAL EFFECT EMBRYO ARREST ... Potri.014G049700
[exp]
14.00 0.8216
AT5G64816 unknown protein Potri.002G105400
[exp]
17.43 0.8205
AT2G38450 unknown protein Potri.008G075000
[exp]
17.49 0.8363
AT4G18100 Ribosomal protein L32e (.1) Potri.011G078200
[exp]
21.35 0.8156 RPL32.1
AT5G30495 Fcf2 pre-rRNA processing prote... Potri.010G002100
[exp]
23.68 0.8251

Potri.011G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.