Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18260 253 / 6e-81 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT2G30890 207 / 2e-66 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G12980 72 / 2e-14 Auxin-responsive family protein (.1) AT4G17280 69 / 4e-13 Auxin-responsive family protein (.1) AT3G25290 65 / 8e-12 Auxin-responsive family protein (.1.2) AT5G47530 59 / 8e-10 Auxin-responsive family protein (.1) AT2G04850 57 / 3e-09 Auxin-responsive family protein (.1) AT5G35735 56 / 6e-09 Auxin-responsive family protein (.1) AT3G61750 49 / 1e-06 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G54830 47 / 9e-06 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204300 [exp] 266 / 2e-89 AT2G30890 228 / 7e-75 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.002G057900 [exp] 228 / 1e-75 AT2G30890 189 / 1e-60 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.002G249300 [exp] 67 / 2e-12 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.002G222700 [exp] 66 / 3e-12 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 60 / 3e-10 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.002G222600 [exp] 59 / 7e-10 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 59 / 1e-09 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 59 / 1e-09 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.014G161700 [exp] 58 / 2e-09 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007333 [exp] 230 / 3e-75 AT4G18260 204 / 2e-62 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10020757 [exp] 207 / 3e-67 AT4G18260 184 / 6e-56 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10006398 [exp] 64 / 1e-11 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10012350 [exp] 63 / 4e-11 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10002274 [exp] 61 / 2e-10 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10017564 [exp] 60 / 4e-10 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10025877 [exp] 58 / 2e-09 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 57 / 2e-09 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10010498 [exp] 55 / 2e-08 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10001734 [exp] 54 / 6e-08 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Potri.011G080400.4 pacid=42780651 polypeptide=Potri.011G080400.4.p locus=Potri.011G080400 ID=Potri.011G080400.4.v4.1 annot-version=v4.1 ATGCGAAATTCTCACTCGTTTGCATCTTTGTCTGTCATATCATACTATGCTGTACTTTTACCCTTTGCTGCTTGCTTATCCCATGAAGATGTCAAGGGTC ACAAGGGCGCACAGCACAACTTCAATCACAAGTTATTGATATGGACTACATCTTCCTCACATATTCAACAGTTGAGCCCTAAGTTGGTCTCGGATATCAA TCTTCACGGGGTTCTCTTATGGGCTTCCATGGGGTTCTTAATGCCTCTCGGGGTGATCACTGTCAGAATGTCCCATAGAGAGGAAGGTGGAAGAAGGAAA GCTCTAGTCTATCTTCATTTTGTTTTGCAGATTCTATCAGTTCTTCTTGCCACAGCTGGAGCTATCATGTCCATAAAATCCTTTGAGAACTCGTTTTACA ACAATCACCAGAGAATAGGTCTTGGACTTTATGGAGCTATATGGGTGCAAGCTGTTGTGGGATTTTTGAGGCCTCGGAGAGGGAATAAAAGAAGAAGAAC ATGGTACATTGTGCATTGGATACTAGGAACTGTGATCTCTCTAGTTGGAATCATCAACATTTATACAGGCATAAGTGCTTATCATAAGAAAATGTCTAGA AGCACAAGGCTCTTAGCTATACTTTTCACAGCCCAGGTCTCTTTCATGGCATTCTTTTATCTGTTTCAAGACAAATGGGAGTACATGCAAAAGCAAGGAG TGATTTTGGGTAACATTGAAGTGCCAATCACTCCCACAGTATGCAATCAACAAAATGATCACAATCAAAAGGTGTTGGTGCCTGAACCATGTGGCAAACG CAATTCACTTAAGAACTTATTTGACTAA
AA sequence Show only first row Show all	>Potri.011G080400.4 pacid=42780651 polypeptide=Potri.011G080400.4.p locus=Potri.011G080400 ID=Potri.011G080400.4.v4.1 annot-version=v4.1 MRNSHSFASLSVISYYAVLLPFAACLSHEDVKGHKGAQHNFNHKLLIWTTSSSHIQQLSPKLVSDINLHGVLLWASMGFLMPLGVITVRMSHREEGGRRK ALVYLHFVLQILSVLLATAGAIMSIKSFENSFYNNHQRIGLGLYGAIWVQAVVGFLRPRRGNKRRRTWYIVHWILGTVISLVGIINIYTGISAYHKKMSR STRLLAILFTAQVSFMAFFYLFQDKWEYMQKQGVILGNIEVPITPTVCNQQNDHNQKVLVPEPCGKRNSLKNLFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18260			Cytochrome b561/ferric reducta...		Potri.011G080400 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	4.24	0.8362
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.010G191500 [exp]	5.19	0.8122
AT5G49960			unknown protein		Potri.004G223400 [exp]	5.47	0.8589
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	9.05	0.7423
					Potri.003G065900 [exp]	10.00	0.7360
AT3G19940			Major facilitator superfamily ...		Potri.007G073900 [exp]	10.95	0.7986
AT5G26910			unknown protein		Potri.005G019700 [exp]	19.33	0.7685
AT3G57440			unknown protein		Potri.006G050900 [exp]	19.74	0.8025
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	23.95	0.7113
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.001G295700 [exp]	25.88	0.7868

Compare expression of checked genes

Potri.011G080400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.