Plant FIBer expression Database

Potri.011G080600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18270 414 / 2e-140 ATTRANS11 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038493
[exp]
447 / 4e-153 AT4G18270 410 / 8e-140 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
Lus10023316
[exp]
421 / 3e-144 AT4G18270 389 / 7e-133 ARABIDOPSIS THALIANA TRANSLOCASE 11, translocase 11 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00953 Glycos_transf_4 Glycosyl transferase family 4
Representative CDS sequence
>Potri.011G080600.1 pacid=42781707 polypeptide=Potri.011G080600.1.p locus=Potri.011G080600 ID=Potri.011G080600.1.v4.1 annot-version=v4.1
ATGGCCTCTCTTCTCTCACCAAACTCCTCCTCCTTCTCCTTTGGATCTAACCATCTGCTTTCATTTACTGTAATTATTCCTGCTCTTCCTTTTTCCTTTG
GACTAGTCATGCTTTCTATAAACCACCACCATCACCTCTCTCGTATACGGCTTTCTCGACCACCAAAACCTTTTTCTTCCTCTCCCCTTTATTCTAATTC
ATTCCACAACTTCAAGTTAAATGGATCAAGTGCTGGAGGACGACGATTGCGCCATAAGATTGTCCAAGTCAGGGCCTTTGATGAGGACTTGTCTGGTGTA
TCCTCCCCGCTTGATGACTGGGCTAACAATGATGGGGCTGCTGGCTACATGCTATTATCCAGTGACGGGGAAGACAGTGATGGAGAATATATTATAAATC
CGGTGACGGATATGGAGTTGCCTACTGCTAAAGTATCAACTAATGATGCTCTCACACTTACAGCTCACAGGCTTGCAATGATTGGGAGGGCCCCCCGAAA
ACGTAGGAACAAACTCGGGACATTAATTAATTTGTGTCTGCTAGCCTTTTTGACGGTTCTTCTCTTATTTGTTGATTGGTGTGCATGGAAGATTGTCAGA
TTACCCCTAGAACCATTTTACTTGTGTCGTCCATTTTTTATATCAGCAGTTCTAGTCTCTTTTTTGGGTTATCTTTGTGTTCCACTACTTAGTGAGTTAA
GAATTCATCAGAATATCTGGAAAGAAGGGCCACTTCGGCACTCCAAGAAAAGGGCAAGCCCCACAATGGGTGGACTATTTTTTGTACCAATTGGTGTAGG
CGTTGCAAAATTTGTTGCTGGTTTCTCTTCTGTTGAAGTTTCTGGAACAGCAGTGGCAACTCTGGCATTTGCAACAATTGGCTTACTAGATGACATTGTA
ACCGTCATAAAAAATCGAAATAGTGGTTTGTCTGTGTGGGTGAAAATATTTTTGGAGGTAGCTGTTGGGACCTGCTTTTCATTTTGGTTGCATACTACGA
GTATATCATCACCCTACAGCATGAAAATGCTGGTTGCCCTACCTGCACCACTGGGCCTCATATGCCTAGGAAAATATTATTCTTTATTGACATCATTTTG
TTTTGTTTCCATGGGAAATGGCATTAACTTAACGGATGGTCTAGACGGCCTGGCTGCTGGAACGGCTGCATTGGCTTTTGTAGGAATGTCGATCGCAGTG
TTGCCAATATGTCCTGAACTTGCTATATTTGGGGCATCGATGGCAGGGGCCTGTTTTGGTTTTCTGTTGCACAACCGGTACAAGGCTTCTGTATTTATGG
GGGATACTGGATCCTTGGCATTGGGTGGAGCATTAGCTGCAATGGCTGCTTGTAGTGGAATGTTCCTTCCATTATTTATCTCATCTGGGATCTTTTTCTT
GGATGCATCATCAGTGATTATGCAGGTGCTGTACTTCAAGACAACCAAACGCATGAGAGGAGATGGGTGCCGTTTGTTCAGGATGGCTCCTATTCATCAC
CACCTCGAGTTATGTGGGCTAAAGGAACCAGTCATTGTTGCTGGGGCTTATGTTATATCTGGAGTGCTGGCTCTGTTTGCTGGGTATGTAGGTCTAATAT
CTGCATAG
AA sequence
>Potri.011G080600.1 pacid=42781707 polypeptide=Potri.011G080600.1.p locus=Potri.011G080600 ID=Potri.011G080600.1.v4.1 annot-version=v4.1
MASLLSPNSSSFSFGSNHLLSFTVIIPALPFSFGLVMLSINHHHHLSRIRLSRPPKPFSSSPLYSNSFHNFKLNGSSAGGRRLRHKIVQVRAFDEDLSGV
SSPLDDWANNDGAAGYMLLSSDGEDSDGEYIINPVTDMELPTAKVSTNDALTLTAHRLAMIGRAPRKRRNKLGTLINLCLLAFLTVLLLFVDWCAWKIVR
LPLEPFYLCRPFFISAVLVSFLGYLCVPLLSELRIHQNIWKEGPLRHSKKRASPTMGGLFFVPIGVGVAKFVAGFSSVEVSGTAVATLAFATIGLLDDIV
TVIKNRNSGLSVWVKIFLEVAVGTCFSFWLHTTSISSPYSMKMLVALPAPLGLICLGKYYSLLTSFCFVSMGNGINLTDGLDGLAAGTAALAFVGMSIAV
LPICPELAIFGASMAGACFGFLLHNRYKASVFMGDTGSLALGGALAAMAACSGMFLPLFISSGIFFLDASSVIMQVLYFKTTKRMRGDGCRLFRMAPIHH
HLELCGLKEPVIVAGAYVISGVLALFAGYVGLISA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G18270 ATTRANS11 ARABIDOPSIS THALIANA TRANSLOCA... Potri.011G080600
[exp]
0 1
AT5G42220 Ubiquitin-like superfamily pro... Potri.005G247900
[exp]
3.16 0.7890
AT1G04140 Transducin family protein / WD... Potri.002G254700
[exp]
7.74 0.7471
Potri.001G284801
[exp]
18.65 0.7752
AT5G53450 ORG1 OBP3-responsive gene 1 (.1.2) Potri.015G016300
[exp]
21.16 0.7241
AT4G38200 SEC7-like guanine nucleotide e... Potri.009G169800
[exp]
30.39 0.7380
AT3G53810 Concanavalin A-like lectin pro... Potri.009G036300
[exp]
33.22 0.7106
AT4G30100 P-loop containing nucleoside t... Potri.002G093500
[exp]
33.80 0.7494
AT3G22470 Pentatricopeptide repeat (PPR)... Potri.019G062332
[exp]
35.87 0.7371
AT3G12640 RNA binding (RRM/RBD/RNP motif... Potri.009G063800
[exp]
38.18 0.7206
AT3G62800 DRB4 double-stranded-RNA-binding pr... Potri.019G037900
[exp]
53.96 0.7059

Potri.011G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.