Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040882 [exp] 416 / 3e-147 ND / Lus10004933 [exp] 96 / 2e-24 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF04481 [poplar] [flax] DUF561 Protein of unknown function (DUF561)
Representative CDS sequence Show only first row Show all	>Potri.011G080900.2 pacid=42781175 polypeptide=Potri.011G080900.2.p locus=Potri.011G080900 ID=Potri.011G080900.2.v4.1 annot-version=v4.1 ATGTTTTCTTCCTCAGTCTGCATGCCGATTTCACCATCTTCCCACTCTCTCTTGAAAGCAAATCACAATCCTCTTCAGGGATCGAAACCATCATGTTCTC CTTCGAAAATAAGAGCTTCTTATTTGACTACTCGAGCTCTTCTCTCAACTACCAAAGAAACAGTGTTGAAGGACTTCCATGAGCGAAGAGCTCTCAAGAT TATCTCAGGTTTGCAGAATTTTAATAAAGAAAATGTTGCTTCAGTTGTTACTGCTGCGGACAAGGGGGGAGCAACTCATGTGGATATAGCTTGTGACCCA GAATTAGTGAAGCTTGCCATTATCCTAACTTCCCTGCCTGTTTGTGTTTCTTCAGTGGAACCAAGAGCATTTCTAGCTGCTGTTGAAGCAGGAGCACAGA TGGTGGAAATTGGAAATTATGATTCGTTTTATGATCAAGGAGTGGTTTTCTCTCCAGAGAAGATATTAAATCTGACAAAGGAGACTAAAAGGATTCTTCC ATCCGTGACATTATCAGTCACTGTTCCTCACACCCTAAGTCTCCCCGATCAGGTCAAGCTTGCAGAGCTATTAGAACAAGAAGGAGTTGACATTATACAA ACTGAAGGAGGAAAGTGTTCTAATCCTTCAAAATCTGGTGTTCTAGGTTTGATTGAGAAGGCAACACCAAGCTTAGCAGCAGCATATTCCATCTCAAGGG CTGTGAAGATTCCAGTTATGTGTTCATCTGGACTTAGTGCAGTTACAGCACCAATGGCCATCACAGCAGGGGCAGCTGGTGTGGGAGTCGGCTCAGCAAT TAACAGGCTAAATGATGTGGTGGCAATGATTGCAGAAGTCAGAAGCATTGCAGATTCATTAGGCAGTTCAGCTGATAGACGCACCAAATCTGAAGAAAAA TCTGTGACATTGTAA
AA sequence Show only first row Show all	>Potri.011G080900.2 pacid=42781175 polypeptide=Potri.011G080900.2.p locus=Potri.011G080900 ID=Potri.011G080900.2.v4.1 annot-version=v4.1 MFSSSVCMPISPSSHSLLKANHNPLQGSKPSCSPSKIRASYLTTRALLSTTKETVLKDFHERRALKIISGLQNFNKENVASVVTAADKGGATHVDIACDP ELVKLAIILTSLPVCVSSVEPRAFLAAVEAGAQMVEIGNYDSFYDQGVVFSPEKILNLTKETKRILPSVTLSVTVPHTLSLPDQVKLAELLEQEGVDIIQ TEGGKCSNPSKSGVLGLIEKATPSLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGAAGVGVGSAINRLNDVVAMIAEVRSIADSLGSSADRRTKSEEK SVTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.011G080900 [exp]	0	1
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	1.41	0.9811
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	1.73	0.9745
AT1G51110			Plastid-lipid associated prote...		Potri.001G011700 [exp]	1.73	0.9821
AT4G13150			unknown protein		Potri.002G242800 [exp]	3.87	0.9732
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	8.00	0.9677	IM30.2
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.001G317600 [exp]	8.83	0.9666
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	8.94	0.9737
					Potri.014G158501 [exp]	9.16	0.9606
AT5G23240			DNAJ heat shock N-terminal dom...		Potri.001G347600 [exp]	9.16	0.9672
AT3G15840		PIFI	post-illumination chlorophyll ...		Potri.001G204300 [exp]	9.16	0.9704

Compare expression of checked genes

Potri.011G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.