Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17210 905 / 0 ATILP1 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) AT1G48950 212 / 1e-58 C3HC zinc finger-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052400 [exp] 222 / 6e-61 AT1G48950 409 / 2e-133 C3HC zinc finger-like (.1) Potri.012G058550 [exp] 57 / 4e-08 AT1G48950 159 / 1e-42 C3HC zinc finger-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038518 [exp] 1264 / 0 AT1G17210 855 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Lus10023288 [exp] 1250 / 0 AT1G17210 848 / 0.0 ARABIDOPSIS IAP-LIKE PROTEIN, IAP-like protein 1 (.1) Lus10038947 [exp] 222 / 6e-62 AT1G48950 487 / 2e-166 C3HC zinc finger-like (.1) Lus10027238 [exp] 218 / 3e-60 AT1G48950 489 / 8e-167 C3HC zinc finger-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0417 [poplar] [flax] BIR-like PF07967 [poplar] [flax] zf-C3HC C3HC zinc finger-like
Representative CDS sequence Show only first row Show all	>Potri.011G081200.4 pacid=42782236 polypeptide=Potri.011G081200.4.p locus=Potri.011G081200 ID=Potri.011G081200.4.v4.1 annot-version=v4.1 ATGGAGAAAATGAGAGAAGAAGTAATCAGCTCTGGAGGGACCATGGATCCAACTCCTGCTGCCAGCTCTGCTGGGGCATCCTCACCACCAAATTTGGGAC ATAATTATAATAATAACTCAAAAGCAGTGTCAGTATGGACAACTTCATTAAGCACAAGTGCTGGTGGTTCTGCTCTCGGCTCTTCTTCTAGACCTTCCTG CAGGCCATGGGAGAGAGGGGATCTGTTGAGGCGTTTGGCTACTTTTAAGCCACCCAATTGGTTTGCAAAGCCTAAGATTGCTAGTTCACTGGCTTGTGCT CAGAGAGGCTGGACGAACATTGATATTAATCAAATTGCATGTGAAACATGTGGTGCACACATGACTTTTGTTTCATTATCTTCATGGACCCCTGCTGAAG TTGAAAGTGCTGCTGAAGCCTTTGCCAAGCAGCTGGATGTTGGCCACCAAGCCACCTGTCCTTGGAGAGGAAACAGCTGCCCTGCAAGCTTGGTGCAGTT CCCTCCAACTCCACAGTCTGCCCTAATTGGAGGATACAAAGATAGATGTGATGGACTCCTGCAATTTCAGTTTCTTCCCACCATTTCTGCATCTGCAATT GAGCTGATGCGGGTTTTGCGGGGACCACTGGTTGACCGCCTTCTATCACAATCACAGAATTTTATCGCTGGAGAAGGTGATTTCAAAACAGAATGCATAG CAGGACTTGAAACCACTAGAGATGGAGCATTCTGTTTCTATACTCGGGCCCAAAAGCTCATAAGTCTATGTGGATGGGAACCCAGATGGCTTCCAAATGT TCAAGACTGCGAAGAAAATTCTGCTCAATCAGCTCGAAATGGGTGGTCTTTTGGCCCTGCACAGGCCCAGGTCCATCTTTCACATGATCTTGGACCAAGC AAGAAAGCACACTCTGCTTCTGCTAAAAATGACACTGGAAAGAACAAAGTTTTTGCTGTTGATTCTAGATGTGATTCCAGGTCACCTTTATTAGATTGTA GCTTATGTGGTGCTACTGTCAGAGTATTGGATTTCTTGACTGTTCCTCGACCTGCTCGTTTTGCTCCCAACAACATTGATATTGCTGATACAAACAAAAA AATGGCGTTGACCCGTGGAGCAAGTGCAGCCAGTGGAATTAGTGGTTGGGTTGCTGCTGATGATACTGAGAAAGATCAGATTGAAGACCGCGATGAAGTT GCAACTACGGACAAGGGAAAATTGCTGCTGAACTCAGAAGTTGATTTGAATCTTACAATGGCTGGGGGTTTATCTTTTACTCAAGAGGGCCGAACAACAA TGCCTGAGAATATTCTAGACGCAGACATGGGAAGGGACTTAATGATTGGTCAACCTTCAGGAAGCGAGGTCGGTGAGCATGCAGCTTCATATGAATCACA TGGACCAAGTTCTCGTAAGCGGAGCTTGGAAATAGGTGGCAGTTCAGATGATAGGCGACAATTGATTATGCAGCGAGCTGATAGTATAGAGGGAACTGTC ATTGATCGAGATGGCGATGAAGTCACAGATGGGCAACAATTTTCAGCAGGGCCTTCAAAACGTGCTCGTGATTCAGATTTTTTTGATACATATTGTTCAC CATATCAGAGAGATTCATCTGGTGCTGGTCCTAGCCATTCAGTGGGTCTTGAAGTCTTTGCTGATGGAAACAGAGCTGCTTCATTTCGTCAAGGAAGTGA TCAAATTGTAGGGATCCCATCGGCTAGAGATTCAACACGTGCATCATCTGTCATTGCAATGGATACAGTTTGTCACAGTGCTGATGATGACTCCATGGAA AGTGTTGAGAATCACCCTGCAGATATTAATGATGTGCATTTCCCCTCTTCTAGTACATATGGCAATTTGGACATGAATGAGACATCAGAACTGAATAATA GCAATCAAGCCCAGCAAAGCATTGGTTTCCAACCTGTTGCTGAAGTAGCTCCGGGAGAAATGGGTGTCAGCAGTACAAATGATGGTGAAGAAATTTTCAA TGCAGAAACAGTTACTGCTCAAGCGCGGGATGGTTTTAGTTTTGGGGTTAGTGGAGGGAGTGTTGGTATGTGTGCTAGTCATGAAGCTGAAATTCATGGG GCTGATGTTTCTGTGCACAGAGCAGATAGTGTTGTTGGGGACTTGGAACCCAGAATAGAAGATGCTGAAAATCAAGGTCAGACTGGTGAATCTGCTCCTG ATCCTGGGTTGATGGATGAGATCGTTCCTGATGAAATAAATAGGGAAGATCCTCGTGGTGATAGCCAGGAGATGCTGTCTCGATCTGTGGAAAGAGCTGC TGACAGTGGCTCAAAAATAGATGGTTCGACAAAGGCTGAATCAGTTGAAAGTGGCAAAAAGGCAAGCCAAAGCTGCAAGTTAGCATTAGATAACAATTCA CATCCCTCTATGTCTTGCAATGCAAACATCTATTCAGGCTATGGAACAACCAACAAAGGGGTTTCAAAGGGTGGAAAATCATCATCTGTTAACAACTGTC CATGTGCAGAATCTGATTATGCAGTCGCCAATGGGATAGGGCCTCCAAAAGGTGAAAGCAATTATGAAGAAGCTATAGAATTTGATCCAATTATTCATCA CAACAAGTTCTGCCCATGGGTTAATGGAAATGTTGCTGCTGCTGGCTGTAGTAGTCGTGGTTCTGGCAGCAATGCTGATACTGCTGCGCTCTGTGGGTGG CAGCTGACTTTGGATGCATTGGATGCTTTACGGTCATTGGGGACTATGCCAATTCAAACCGTACAGTCCGAGTCAGCTGCATCTTTGTATGAGGATGATC ACCAAACTCCTGGTCAAAAGCTCCTTCAACGGCATTCTATGAGCAAAAGCCATGGGCAACACTTAGATTAA
AA sequence Show only first row Show all	>Potri.011G081200.4 pacid=42782236 polypeptide=Potri.011G081200.4.p locus=Potri.011G081200 ID=Potri.011G081200.4.v4.1 annot-version=v4.1 MEKMREEVISSGGTMDPTPAASSAGASSPPNLGHNYNNNSKAVSVWTTSLSTSAGGSALGSSSRPSCRPWERGDLLRRLATFKPPNWFAKPKIASSLACA QRGWTNIDINQIACETCGAHMTFVSLSSWTPAEVESAAEAFAKQLDVGHQATCPWRGNSCPASLVQFPPTPQSALIGGYKDRCDGLLQFQFLPTISASAI ELMRVLRGPLVDRLLSQSQNFIAGEGDFKTECIAGLETTRDGAFCFYTRAQKLISLCGWEPRWLPNVQDCEENSAQSARNGWSFGPAQAQVHLSHDLGPS KKAHSASAKNDTGKNKVFAVDSRCDSRSPLLDCSLCGATVRVLDFLTVPRPARFAPNNIDIADTNKKMALTRGASAASGISGWVAADDTEKDQIEDRDEV ATTDKGKLLLNSEVDLNLTMAGGLSFTQEGRTTMPENILDADMGRDLMIGQPSGSEVGEHAASYESHGPSSRKRSLEIGGSSDDRRQLIMQRADSIEGTV IDRDGDEVTDGQQFSAGPSKRARDSDFFDTYCSPYQRDSSGAGPSHSVGLEVFADGNRAASFRQGSDQIVGIPSARDSTRASSVIAMDTVCHSADDDSME SVENHPADINDVHFPSSSTYGNLDMNETSELNNSNQAQQSIGFQPVAEVAPGEMGVSSTNDGEEIFNAETVTAQARDGFSFGVSGGSVGMCASHEAEIHG ADVSVHRADSVVGDLEPRIEDAENQGQTGESAPDPGLMDEIVPDEINREDPRGDSQEMLSRSVERAADSGSKIDGSTKAESVESGKKASQSCKLALDNNS HPSMSCNANIYSGYGTTNKGVSKGGKSSSVNNCPCAESDYAVANGIGPPKGESNYEEAIEFDPIIHHNKFCPWVNGNVAAAGCSSRGSGSNADTAALCGW QLTLDALDALRSLGTMPIQTVQSESAASLYEDDHQTPGQKLLQRHSMSKSHGQHLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	0	1
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.014G028100 [exp]	1.73	0.8524
AT1G70570			anthranilate phosphoribosyltra...		Potri.010G044900 [exp]	3.00	0.8367
AT1G73660			protein tyrosine kinase family...		Potri.012G048400 [exp]	3.87	0.8440
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	4.47	0.8452
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	5.29	0.8405
AT5G63020			Disease resistance protein (CC...		Potri.001G313300 [exp]	5.74	0.8458	RGA3.1
AT1G60670			Protein of unknown function (D...		Potri.008G145100 [exp]	10.39	0.8141
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	11.22	0.8436
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.005G146400 [exp]	12.64	0.8114
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	12.64	0.8357	Pt-SPL1.4

Compare expression of checked genes

Potri.011G081200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.