Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) AT1G21660 123 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) AT4G12770 124 / 7e-30 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 122 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36520 117 / 1e-27 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 114 / 6e-27 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G75310 110 / 3e-25 AUL1 auxilin-like 1, auxin-like 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133100 [exp] 127 / 3e-35 AT1G30280 92 / 5e-23 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G197600 [exp] 122 / 4e-29 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G217200 [exp] 121 / 6e-29 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G120700 [exp] 120 / 9e-29 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 119 / 1e-28 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 119 / 2e-28 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G079200 [exp] 117 / 3e-28 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 119 / 4e-28 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G134300 [exp] 117 / 1e-27 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005923 [exp] 160 / 1e-44 AT1G30280 119 / 2e-30 Chaperone DnaJ-domain superfamily protein (.1) Lus10036149 [exp] 155 / 3e-42 AT1G30280 182 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Lus10016079 [exp] 125 / 4e-30 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012303 [exp] 124 / 5e-30 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10018811 [exp] 120 / 7e-29 AT1G75100 183 / 3e-50 J-domain protein required for chloroplast accumulation response 1 (.1) Lus10024270 [exp] 117 / 1e-27 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10041769 [exp] 115 / 6e-27 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 115 / 6e-27 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10012302 [exp] 115 / 9e-27 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10028548 [exp] 112 / 5e-26 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G081500.2 pacid=42781303 polypeptide=Potri.011G081500.2.p locus=Potri.011G081500 ID=Potri.011G081500.2.v4.1 annot-version=v4.1 ATGGATGAGTCGTGGCGAATGCGCATGGGAGTGCCAACGCCGAGCGTCCCAAGACGCCGCTCCATGGAGGATATTGCAACCACAAGACATTCCATGGATG CCAGATTGGACCCAGATGACTTCTCTGACGTCTTCGGTGGGCCTCCAAGGAGTGTTCTCTCTCGCAAATTCCCCGCCGATTTCACCAGATCTTCTTCTTC TTCTTCTTCTTTCTATGAGGAGATTTTCCTCCCAGAAACGGACTCTCTTTCGAAAGGGAAAAAGAATGGCGGACGTAGCCTGCCGGCGTTCAGAATCCCG GCCAGGGGAGAAGGGTTCTACAGTGATGTGTTTAGGTTGTCTGACGAGGGCAGGAGGTCCAGGCAACGGTCAAGGGCCAACTCCAAGTCCAAGTCCAACT CTTCGTCGGTGCTGAGTTCGGAGGAGCTTAGTCCTCAACGGCGGATGGTGACCGGAGATGACGTTGCATTATCTTCTTTCGCTTCAAAGCTCAGGCCAAT CAATGTACCTTACAGATGGAACTCAGCCACAGGGAGGCCCGAAGGACAACCAGCTGGGAGACAATGGAACATGCCATCTTTTCCACGCAATCATACCGAG AAATGTTACATGGAAAATGAATACATTGATGAGAAAGTCAGATGCTGCTCCTCTTATTTTAAGGTTTCACGGCAGGTCTCATCCCCGGAAACCATTAGTC TTGAGCCCCATTCACACCGAAGCATCAAGATTTCTGTGGATGATTTAGAACTCAACTCCCCTTCATCTCCGGCCTCTTCACTGTGTCATGAACCAGAGGC AAAAGCTGGTGTACAGTGTAATGTAATGCTAGAAGAAGAACTGGAACAGGTTGAAGATGAAGATGAAGATGAAGTAATGAGTTCTTATGTTATCGAGATC AATTCTGATCATAGAGAAGGGACGGGCGAAGCAGTTTCTATTGACGAAGCAATTGCATGGGCTAAGGAGAAATTCCGCTCAAGATCTTTTGATAGACAGC ACGAAAATGTTTCGATGGACCACCACTCAGATGAAGCAGAAGAAAGGCGTAATGTGCATGATTTTGTTGGGCATCAATTGGATGGACATGGGAGTAGGCA ATGCACTATGGAAGAAGAGCTGAAGAAATCCAGAAGAGAAGAAGTAGAAAAATCAGAAAAAGATATGGAGATGGAGTTATTGGATGAAGACATTAGGCTG TGGTCAGCTGGCAAGGAAACTAATATCCGTCTGCTGCTATCCACACTTCATCACATTCTATGGCCAAATAGCGGTTGGTATGCAATCGCCCTAACAAGCC TCATTGAGAGCTCACAAGTAAAGAAAGCTTATCAGAAAGCAAGGCTATGTCTCCATCCTGACAAGTTGCAACAAAGAGGAGGTACACTCTCACAGAAATA TGTCGCAGAGAAGGCCTTCTCCATCCTGCAGGATGCATGGGCTTCTTTCATCTCCCAAGATTTGTTGTTTAACTAG
AA sequence Show only first row Show all	>Potri.011G081500.2 pacid=42781303 polypeptide=Potri.011G081500.2.p locus=Potri.011G081500 ID=Potri.011G081500.2.v4.1 annot-version=v4.1 MDESWRMRMGVPTPSVPRRRSMEDIATTRHSMDARLDPDDFSDVFGGPPRSVLSRKFPADFTRSSSSSSSFYEEIFLPETDSLSKGKKNGGRSLPAFRIP ARGEGFYSDVFRLSDEGRRSRQRSRANSKSKSNSSSVLSSEELSPQRRMVTGDDVALSSFASKLRPINVPYRWNSATGRPEGQPAGRQWNMPSFPRNHTE KCYMENEYIDEKVRCCSSYFKVSRQVSSPETISLEPHSHRSIKISVDDLELNSPSSPASSLCHEPEAKAGVQCNVMLEEELEQVEDEDEDEVMSSYVIEI NSDHREGTGEAVSIDEAIAWAKEKFRSRSFDRQHENVSMDHHSDEAEERRNVHDFVGHQLDGHGSRQCTMEEELKKSRREEVEKSEKDMEMELLDEDIRL WSAGKETNIRLLLSTLHHILWPNSGWYAIALTSLIESSQVKKAYQKARLCLHPDKLQQRGGTLSQKYVAEKAFSILQDAWASFISQDLLFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	0	1
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	1.00	0.9034
AT2G32280			Protein of unknown function (D...		Potri.007G119600 [exp]	1.41	0.8794
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	1.73	0.8753
AT4G15450			Senescence/dehydration-associa...		Potri.018G087500 [exp]	3.00	0.8326
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	6.70	0.8378
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	7.74	0.8368	BGAL1.1
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Potri.001G359000 [exp]	8.36	0.7908	IAMT1
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	9.89	0.8363
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.017G069600 [exp]	11.74	0.8067
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G239802 [exp]	11.95	0.8249

Compare expression of checked genes

Potri.011G081500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.