Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30300 506 / 0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT4G03610 398 / 4e-140 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2) AT3G13800 206 / 4e-64 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G036800 [exp] 211 / 2e-65 AT3G13800 515 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023286 [exp] 524 / 0 AT1G30300 527 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10038519 [exp] 326 / 2e-112 AT1G30300 323 / 3e-111 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10004844 [exp] 209 / 4e-65 AT3G13800 530 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF12706 [poplar] [flax] Lactamase_B_2 Beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.011G081600.4 pacid=42781727 polypeptide=Potri.011G081600.4.p locus=Potri.011G081600 ID=Potri.011G081600.4.v4.1 annot-version=v4.1 ATGGAGTCCCAAAACAGCAACATTTGTAATAACGGATCGGCTCTAATCTTCCTTGGGACAGGATGCTCGAGCGCCGTCCCCAACGTCAGGTGCCTCCTCC AGCCATCAGATCCTCCTTGCTCCGTTTGCTCTCAGGCCCTCTCCGTCCCTCCCAACCAAAACCCTAACTACAGATGCAATACATCACTCGTTATAGATCA CTACAGTGAGAGTGATAATGCACACAGCTATATATTGATAGATGTGGGTAAGACATTCAGGGAGCAAGTCCTTAGGTGGTTTACTCTCCACAACATTCCT CGTATTGATTCTATCATTTTGACTCATGAACATGCTGATGCAGTTCTTGGTCTTGATGATATACGTGCTGTGCAACCATATAGCCCGATAAATGACATTG ATCCCACTCCCATCTACCTAAGTCACCATGCAATGGATAGCATTGCAGAGAAATTCCCTTACTTGGTACAGAAACAATTGAAGCCAGGCCAGGAAATAAG ACGAGTAGCACAGCTGGACTGGCATATAATTGAGGAAGACCATCAAAGACCATTTGTTGCATCAGGCATACAGTTTGTTCCTTTGCCAGTGATGCATGGA GAAGATTATATTTCTCTGGGGTTTCTCTTTGGTGAAAAATGTAGAGTAGCTTATATATCTGATGTTTCACGCATTCCATCTAGCACAGAGCATGTAATTT CAAAAGCTAGTGCAGGGCAATTGGATATTCTGATCCTGGACACTTTATACAAGAATGGGTCTCATAATACACACTTTTGCCTCCCTCAGACTCTTGAGAC AGTGAAGAGATTATGCCCAAAGCGAGCTCTTTTAATTGGAATGACCCATGAATTTGATCATTACAAGGACAATGACTTTCTAACGGAATGGTCTCAAAGG GAAGGAATACCAGTGCAGCTGGCGCGCGATGGTCTGAGAATTCCTGTAGAACTATCTTAA
AA sequence Show only first row Show all	>Potri.011G081600.4 pacid=42781727 polypeptide=Potri.011G081600.4.p locus=Potri.011G081600 ID=Potri.011G081600.4.v4.1 annot-version=v4.1 MESQNSNICNNGSALIFLGTGCSSAVPNVRCLLQPSDPPCSVCSQALSVPPNQNPNYRCNTSLVIDHYSESDNAHSYILIDVGKTFREQVLRWFTLHNIP RIDSIILTHEHADAVLGLDDIRAVQPYSPINDIDPTPIYLSHHAMDSIAEKFPYLVQKQLKPGQEIRRVAQLDWHIIEEDHQRPFVASGIQFVPLPVMHG EDYISLGFLFGEKCRVAYISDVSRIPSSTEHVISKASAGQLDILILDTLYKNGSHNTHFCLPQTLETVKRLCPKRALLIGMTHEFDHYKDNDFLTEWSQR EGIPVQLARDGLRIPVELS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	0	1
AT1G50670			OTU-like cysteine protease fam...		Potri.011G139500 [exp]	1.00	0.9501
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Potri.001G007800 [exp]	1.73	0.9471	PP2.4
AT3G01750			Ankyrin repeat family protein ...		Potri.010G055700 [exp]	2.23	0.9420
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	3.16	0.9347
AT2G38710			AMMECR1 family (.1.2)		Potri.008G019325 [exp]	3.46	0.9325
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	6.92	0.9418
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.011G091100 [exp]	8.71	0.9247
AT2G20420			ATP citrate lyase (ACL) family...		Potri.002G259600 [exp]	8.77	0.9342
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	9.38	0.9392
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	10.39	0.9428

Compare expression of checked genes

Potri.011G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.