Plant FIBer expression Database

Potri.011G082000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26750 373 / 1e-126 EXT-like extensin-like, hydroxyproline-rich glycoprotein family protein (.1)
AT3G59100 47 / 2e-05 ATGSL11 glucan synthase-like 11 (.1)
AT2G31960 44 / 0.0003 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2)
AT1G05570 43 / 0.0004 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G058300
[exp]
44 / 0.0002 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Potri.003G214200
[exp]
44 / 0.0002 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.001G230000
[exp]
44 / 0.0002 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033994
[exp]
474 / 7e-166 AT4G26750 388 / 1e-132 extensin-like, hydroxyproline-rich glycoprotein family protein (.1)
Lus10012781
[exp]
472 / 3e-165 AT4G26750 390 / 2e-133 extensin-like, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04652 Vta1 Vta1 like
Representative CDS sequence
>Potri.011G082000.1 pacid=42780995 polypeptide=Potri.011G082000.1.p locus=Potri.011G082000 ID=Potri.011G082000.1.v4.1 annot-version=v4.1
ATGGGGAGCGAGAACGAGCCAGCGAAACTACTGTTACCGTACCTGCAAAGAGCCGATGAGCTACAGAAACATGAAACTCTCGTCGCTTATTACTGTCGAT
TATATGCGATGGAGAAAGGATTGAGGATTCCACAAAATGAACGGACTAAGACTACTAATTCTCTCCTTATTTCTCTCATGAATCAGCTCGAAAAGGATAA
GAAATCATTGAATTTGGGACCTGAAGACAATCTGTATCTTGAAGGATTTGCCTTGAATGTGTTTGGGAAGGCAGACAAACAAGATCGTGCTGGACGAGCT
GATTTGAATACTGCAAAAACATTTTATGCAGCAAGCATATTCTTTGAGATCATAACTCAATTTGGTGCACTTCAGCCTGATCTTGAGCAGAAACAGAAGT
ATGCAGTTTGGAAAGCTGCAGACATAAGGAAAGCTCTGAAAGAAGGAAGGAAGCCCAACCCAGGCCCACCTGCTGATGATGAAAATCTATCAATTCCATC
AAGCACACCTAGTGGTGGATATGATCTTGGACCAAGTGAATCTGCAGCTAGCAATGCTCGTCCAGAATCTGCAGCTAGCAATGCTCGTCCAGAATCTGAT
CCATCACCTCAGTTCCACGATCAACTTAATGATGAGCCCTATACAAACATTCCACCATCCCCTCTGTTCCATGATAAGGTAAACAACCACCATTCTGCAC
ACGTTCCACCACCATCTCTGTTCTATGACTCAGCTAGCAACCAACATTCGACAGACACCCCTCCACCTTCTTTTTACCCTGCTGCTGGCTATCCTTCACA
GGATTTTCATCCACCTCCTCCAGCAAGCAGATCAGAGAATTCTGCATATGCTCAACCATACCACCATCAATCCAACTCGCAAGAACCTCAACCACATTTG
CCACAAAATTACCAATCTCATGAACCTTCCTCATACTCTTATCCCAACTTCCAGTCTTATCCAAGTTTCTCAGAGAGTAGTCTCCCATCAGTACCATCAC
ATCACCCATCATACTATCAGGGTTCTGATTCTTCGCACACCCCCCAGCCGGCCCCTCCCACAAGCAGCTATTCATCAACTCCACAGTACGCTTCAAGCAG
CATAATGAGGACCACCTCGGATCCTGCATCAACTTCTGCTAAGACATACCAATATGACATCAATTACCAACCACCTCCTGAGAAAATTGTAGAGGCACAC
AAAGCTGCAAGATTTGCAGTTGGAGCCTTGGCATTTGATGACGTGTCAGTTGCTGTGGACTACTTGAGGAAATCACTTGAATTGCTGACAAATCCATCAG
TTGGGCAGTGA
AA sequence
>Potri.011G082000.1 pacid=42780995 polypeptide=Potri.011G082000.1.p locus=Potri.011G082000 ID=Potri.011G082000.1.v4.1 annot-version=v4.1
MGSENEPAKLLLPYLQRADELQKHETLVAYYCRLYAMEKGLRIPQNERTKTTNSLLISLMNQLEKDKKSLNLGPEDNLYLEGFALNVFGKADKQDRAGRA
DLNTAKTFYAASIFFEIITQFGALQPDLEQKQKYAVWKAADIRKALKEGRKPNPGPPADDENLSIPSSTPSGGYDLGPSESAASNARPESAASNARPESD
PSPQFHDQLNDEPYTNIPPSPLFHDKVNNHHSAHVPPPSLFYDSASNQHSTDTPPPSFYPAAGYPSQDFHPPPPASRSENSAYAQPYHHQSNSQEPQPHL
PQNYQSHEPSSYSYPNFQSYPSFSESSLPSVPSHHPSYYQGSDSSHTPQPAPPTSSYSSTPQYASSSIMRTTSDPASTSAKTYQYDINYQPPPEKIVEAH
KAARFAVGALAFDDVSVAVDYLRKSLELLTNPSVGQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26750 EXT-like extensin-like, hydroxyproline-... Potri.011G082000
[exp]
0 1
AT4G31170 Protein kinase superfamily pro... Potri.006G280000
[exp]
3.00 0.8987
Potri.017G152420
[exp]
3.74 0.9018
AT1G28280 VQ motif-containing protein (.... Potri.004G044800
[exp]
5.38 0.8444
Potri.019G036280
[exp]
8.77 0.8669
AT2G19270 unknown protein Potri.006G075000
[exp]
13.22 0.8765
AT2G17670 Tetratricopeptide repeat (TPR)... Potri.005G103300
[exp]
13.41 0.8735
AT5G06160 ATO ATROPOS, splicing factor-relat... Potri.015G017200
[exp]
20.00 0.8519
Potri.019G129780
[exp]
21.35 0.8729
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.010G022500
[exp]
21.54 0.7410
AT1G77030 hydrolases, acting on acid anh... Potri.005G185900
[exp]
22.44 0.8599

Potri.011G082000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.