Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30290 1015 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 294 / 9e-88 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 258 / 7e-76 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 257 / 2e-75 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 254 / 4e-74 RPF2 rna processing factor 2 (.1) AT5G65560 258 / 2e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 255 / 2e-73 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 253 / 4e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 250 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 251 / 3e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105600 [exp] 281 / 7e-83 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 270 / 2e-79 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 262 / 1e-76 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 260 / 1e-75 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 256 / 1e-74 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 251 / 4e-73 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G019300 [exp] 250 / 4e-73 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 250 / 7e-73 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 248 / 2e-72 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005303 [exp] 1105 / 0 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010585 [exp] 466 / 2e-157 AT1G30290 481 / 8e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 264 / 9e-77 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 263 / 3e-76 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 266 / 1e-75 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 250 / 2e-71 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 248 / 1e-69 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 241 / 2e-69 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10038377 [exp] 240 / 1e-68 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 243 / 4e-68 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.011G082300.2 pacid=42781685 polypeptide=Potri.011G082300.2.p locus=Potri.011G082300 ID=Potri.011G082300.2.v4.1 annot-version=v4.1 ATGCTATATAATTTCGTTCCTTACTCCAAATTCCCAAAACTTGTAGCCTATATCCCTTTCTTTCACTTTGTTCATACTGCCAAAAAGCATTACCGCACCA CCCCATTTCCCTATATTCATATGTTTCTTTCACTTTTTTCTTCAACAAATCATGGTCCTCATTCTTATTTTGATTCTGATTCTTCAACTACTAATTCCAC TTCCCATCTTGTTGAAACTGAGAATTCTTATGATGCTAATGATGGGTTTGGAAAAATGGGTTTTAATTTTAGCAATGCTCACTGTCAAGTTTATTCTGAT GGTTTTAGTGATGAGGTTGAAGAATCTGATGAAGAACGCGGCCAAGGTAACAGTTCATGTACTGATAGGAATCAAGGCACCAAAATGGATGAGGATTGGA GGAGAATTGAGATACACGAAGATGAATTTCGACATCCTTTGGTCAGAGAAATTTGTAGGTTGATTGAATGCAGGTCGGCTTGGAACCATAAGCTTGAAGG GAAAATGAGGCACTTGCTAAGAGGCCTCAAGCCTCGACTTGTTTGTGCTGTTTTGCTGTCTCAATCTGATGAAAGGGTTGCTTTGGATTTCTTCTTTTGG TCCGACAGGCAATGGCGGTATCGGCATGATCCAATTGTGTACTGTGTGATGCTTGATGTTCTTAGCAAAACTAAACTGTGTCAAGGTGCTAGGAGGGTTC TTCGGCTCATGGTACGTAGGGGAATTCAGCGTACGCCTCAAGATTTTTGTTGTGTGATGGTGTCTTATAGTCGGGCTGGTAAGTTGAGGAATGCAATGCA GGTCTTGACCATGATGCAGAAAGCAGGTATTGAACCTAATTTGTTGGTTTGTAACACTGCTATTCATGTTTTGGTGATGGCAAATATGTTGGAAAAGGCT TTGAGATTTCTAGAGAGAATGCAACTTCTTGGAATCATGCCAAATGTTGTCACTTATAACTGTTTGATCAAGGGATATTGTGATCTTCATAGGGTTGAAG ATGCCATGGAGCTAATTTCTGAAATGCCATTGAAAGGATGCTCCCCAGATAAAGTTAGTTACTATACTGTAATGGGCTTCCTTTGCAAAAACAGAAGGAT CAGAGAAGTGATGGACGTAATAGAGAAAATGGAGGATACTAAGTTGTTAGCGGATCAGGTTACTTATAATACATTAATACATATGCTTTGTAAGCATCAG CATGCAGATGAGGCACTTCAGTTTTTAAGAGAAGCACAAAAAAGGGGTTTTCAGGTTGATAAGGTTGGGTATAGTGCGATAGTTGATTCATATTGTAAGG AGGGAAGGATGGACCAGGCGAAAGAAATTGTGAATGAAATGTTCACAAGGGGCTGCATCCCTGATGTTGTGACTTACACAGCAATTATTAATGGATTTTC TCAGGCTGGGGAGGTTGGTCAAGCTAGGAAGATGCTTCAGCAAATGTACAAGCATGGCTGCAAACCAAACACTGTATCATATACAGCCTTCTTAAAAGGG CTTTGTCAAAAGGGGAACTCATCAGAGGCAAGGGAGATGATGAAGGCGAGTGAGGAACAGTGGTGGACCCCAAATGCTATTACCTATAGTGTTGTGATGC ATGGGTTTCGGAGGGAAGGAAAGCTGTCTGATGCTTGTGATGTGGTGAGGGAGATGATTGGCAAGGGCTTTTTCCCAACTCCAGTTGAAATTAACTTACT ACTTCAGTCTCTCTGCCGGATCGGCAGAGTGGATGAGGCAAAAAAGTTTATGGAGGAGTGTCTTAACATGGGGTGTGCTGTCAATGCTGTAAACTTTACT ACTGTAATTCACAGATTTTGTCAGCAGGATGACATAGAAGCAGCTTTATCTTTGCTTGATGACATGTATCTAAGCAACAAACACCCTGATGCAGTCACTT ATACGACGATAATTGATGCATTAGGAAAGAAAGGTAGAATAGAAGAGGCCACTGAGCTTACGTTGAAGATGCTGAAGAAGGGTATAGATCCTACACCAGT AACATATAGAACAGTGATTCATCGATATGGTCAAATAGGTAGGGTGGAAGATTTATTAAATTTATTAGATAAAATGCTTACAAGGCAAGAGTGTAGAACT GCATTTAATCAAGTTATTGAGAAGCTATGTACTTTTGGAAACCTAGAGGCGGCTGATAAACTCTTAGGTAAGGTTTTGAGAACAGCCTCAAGAATTGATG CTAACACATGCCATGTGCTAATGGAGAGTTATTTGAGAAAAGGGATCCCTCTGTCAGCATATAAAGTGGCTTGTCGTATGTTTAGTCGAAGTCTGATTCC TGATTTAAAGTTGTGTGAGAAGGTGTGCAAGAAACTAATGCAGGAAGGAAAGTCAGAGGAGGCAGACAATCTGTTCTTACGGTTTGTTGAGCGTGGGAAT ATTTCATCGCATTGTCTACGGCATTCTCAAACCGAGTGA
AA sequence Show only first row Show all	>Potri.011G082300.2 pacid=42781685 polypeptide=Potri.011G082300.2.p locus=Potri.011G082300 ID=Potri.011G082300.2.v4.1 annot-version=v4.1 MLYNFVPYSKFPKLVAYIPFFHFVHTAKKHYRTTPFPYIHMFLSLFSSTNHGPHSYFDSDSSTTNSTSHLVETENSYDANDGFGKMGFNFSNAHCQVYSD GFSDEVEESDEERGQGNSSCTDRNQGTKMDEDWRRIEIHEDEFRHPLVREICRLIECRSAWNHKLEGKMRHLLRGLKPRLVCAVLLSQSDERVALDFFFW SDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKA LRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQ HADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKG LCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFT TVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQECRT AFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEADNLFLRFVERGN ISSHCLRHSQTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30290			Tetratricopeptide repeat (TPR)...		Potri.011G082300 [exp]	0	1
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.008G217200 [exp]	8.94	0.8954
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	9.64	0.9346
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	10.95	0.9128
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	11.57	0.8508
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Potri.017G055600 [exp]	12.92	0.8186	Pt-UBP2.1
AT4G10950			SGNH hydrolase-type esterase s...		Potri.003G141300 [exp]	14.69	0.9510
AT1G20370			Pseudouridine synthase family ...		Potri.002G014400 [exp]	14.96	0.9148
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.006G256300 [exp]	17.20	0.9040
					Potri.003G013856 [exp]	17.83	0.9497
					Potri.009G168700 [exp]	18.33	0.8931

Compare expression of checked genes

Potri.011G082300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.