Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46190 526 / 1e-180 RNA-binding KH domain-containing protein (.1) AT4G18375 456 / 1e-154 RNA-binding KH domain-containing protein (.1.2) AT5G15270 219 / 2e-63 RNA-binding KH domain-containing protein (.1.2) AT1G14170 168 / 1e-45 RNA-binding KH domain-containing protein (.1.2.3) AT5G53060 153 / 3e-39 RNA-binding KH domain-containing protein (.1.2) AT1G51580 135 / 2e-33 RNA-binding KH domain-containing protein (.1) AT5G64390 98 / 5e-21 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G09560 85 / 6e-17 RNA-binding KH domain-containing protein (.1) AT3G04610 82 / 4e-16 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT2G22600 74 / 2e-13 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066100 [exp] 922 / 0 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 219 / 8e-64 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 213 / 2e-61 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 181 / 8e-50 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 184 / 9e-50 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 181 / 1e-49 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 162 / 2e-42 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 148 / 2e-37 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.015G011100 [exp] 146 / 8e-37 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023300 [exp] 714 / 0 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 701 / 0 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 213 / 3e-61 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 207 / 2e-58 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 186 / 9e-51 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 182 / 8e-50 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10033557 [exp] 138 / 2e-35 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10005915 [exp] 127 / 2e-30 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 126 / 5e-30 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 115 / 2e-26 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.011G082500.1 pacid=42781514 polypeptide=Potri.011G082500.1.p locus=Potri.011G082500 ID=Potri.011G082500.1.v4.1 annot-version=v4.1 ATGGTGGAGAGTGGAAAGCGGTCGCGTCCCCAAAGAGATTATGACGGGGATACTAATAATCAGAAGAGGCACAAAGATGATAAAGGTACTAATAATGATG GACTGATTGTTTATAGAATATTATGCCCTGACGGGGTAATTGGAAGTGTCATTGGTAAGAGTGGTAAAGTCATAAACTCCATAAGGCATGAGTCAAGGGC AAGAGTTAAGGTGGTGGACCCGTTTCCAGGTGCCAAGGATAGGATCATAACGATTTATTGCCATATCAAGGAGAAGGAAGATGTTGATGTTGATGATGAT TTCAATCACACCAACCCTTTGTGTGCTGCACAGGATGCTCTTCTTAAAGTTCATGCTGCGATTTCTAATGCTGTTGCATCTCTTGGGGATTCTGACAAGA GACTGAGAGATAAGGAGGAATGCCAGATTCTTGTCCCAGCTAGCCAGTCTGCAAATATTATTGGCAAGGCTGGGGCAACTATAAAGAGACTGAGAAGCAA GACCAGGACCAGCATTAAAATCATTGCCAAAGATTCCACTGACCCAACTCACTCATGTGCTATGGACTTTGACAACTTTCTTCTGATAACCGGCGAATCA GAAGCTGTGAAGAAAGCTTTGTTTGCAGTTTCTGCAATCATGTATAAGTTCAATCCAAAAGAAGAAATTCCCCTTGAGGCAACTGTACCAGAACCTCCTC CAAGCATCATTATACCATCAGATGTCCCTATTTATCAACCGGGTGGATTTTATCCAAATGCAGAACCAATTGTTTCTTCTAGATCTGTTCCACCAATCTT AGGTGCTACACATATACCAGAGCTTCAGGGTTATGGGGATATGGGGAGTTCTTGGCCCGTTTATACATCTACACTCCCTGTAGTTCCTAGTTTTGGCAAT GTCTCTCGATATGAGGAGTTAATTATACGAGTATTATGCCCGTTTGACAAGATTGGGCGTGTCATTGGCAAGGGTGGGAGTACCATTAAAAGCATAAGAC AGGCAAGTGGTGCTCGTATTGAGGTTGATGATACTAAGGCTGATCGGGATGAGTGTATCATTACAGTTACTGCAACTGAGTCTCCCGATGATTTGAAATC CATGGCAGTTGAAGCCATTTTATTGCTTCAAGGAAAGATTAATGATGAAGACGATGACACTGTTGGCTGTCGACTCCTTGTTCTGTCTAAAGTTATTGGG TGTATCATAGGAAAAGGTGGTTCAACTATAAACGAAATTCGAAAGAGAACTAATGCTGATGTCCGCATCTCAAAAGGGGCTAAGCCTAATTGTGCTGATA GTAATGATGAACTTGTTGAGGTGGTTGGGGAAGTTAGTAGCGTTAGAGATGCACTTGTCCAGATTGTTCTAAGGCTCAGAGATGATGTATTGAAAGAAAA GGATGGTGGTCTGAATTCTTTGGTTGGTACTGACTCTGTATACCCTGTTGGTGCTGGTCTTTCTATACCATCTATCCTGCCTTCTGTTCCACCAGTTGCT CCAATGGGTTATGATCAGAGGGCTGAAAGTGGAAGTGGATTGGGCCTGCTTTCATCAAGCAGCCTTTATGGATACGGATCCTTACCGATGGTAGAAAATA GCTATGGTTCTCTGGCCTCGTATTCTTCATCTAAGCTGTATGCAGGTTTTCCCCCACCCTCAACTCTTGAAATGTTAGTGCCTGCTAATGCAGTTGGCAA AGTGATGGGTAAAGGAGGTGCAAATATAGCCAACATCCGAAAGATATCAGGAGCAATGATAGAAATCTCTGATGCCAATTCTGCAAGAGGTGATCGTATT GCTCGTATATCTGGCACGCTAGAGCAAAAACGGGCCGCTGAAAACTTGATCCAGGCATTTATTATGGCCACTTAA
AA sequence Show only first row Show all	>Potri.011G082500.1 pacid=42781514 polypeptide=Potri.011G082500.1.p locus=Potri.011G082500 ID=Potri.011G082500.1.v4.1 annot-version=v4.1 MVESGKRSRPQRDYDGDTNNQKRHKDDKGTNNDGLIVYRILCPDGVIGSVIGKSGKVINSIRHESRARVKVVDPFPGAKDRIITIYCHIKEKEDVDVDDD FNHTNPLCAAQDALLKVHAAISNAVASLGDSDKRLRDKEECQILVPASQSANIIGKAGATIKRLRSKTRTSIKIIAKDSTDPTHSCAMDFDNFLLITGES EAVKKALFAVSAIMYKFNPKEEIPLEATVPEPPPSIIIPSDVPIYQPGGFYPNAEPIVSSRSVPPILGATHIPELQGYGDMGSSWPVYTSTLPVVPSFGN VSRYEELIIRVLCPFDKIGRVIGKGGSTIKSIRQASGARIEVDDTKADRDECIITVTATESPDDLKSMAVEAILLLQGKINDEDDDTVGCRLLVLSKVIG CIIGKGGSTINEIRKRTNADVRISKGAKPNCADSNDELVEVVGEVSSVRDALVQIVLRLRDDVLKEKDGGLNSLVGTDSVYPVGAGLSIPSILPSVPPVA PMGYDQRAESGSGLGLLSSSSLYGYGSLPMVENSYGSLASYSSSKLYAGFPPPSTLEMLVPANAVGKVMGKGGANIANIRKISGAMIEISDANSARGDRI ARISGTLEQKRAAENLIQAFIMAT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	0	1
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	1.00	0.9214
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	1.73	0.8989
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	3.16	0.9082
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	3.46	0.8981	RHF2.3
AT4G27680			P-loop containing nucleoside t...		Potri.012G025351 [exp]	5.29	0.8867
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.002G241800 [exp]	7.14	0.8679
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	7.34	0.8899
AT5G17370			Transducin/WD40 repeat-like su...		Potri.003G155900 [exp]	7.34	0.8782
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	8.36	0.8915
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G125951 [exp]	10.19	0.8791

Compare expression of checked genes

Potri.011G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.