Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46180 734 / 0 DELTA-OAT ornithine-delta-aminotransferase (.1) AT1G80600 201 / 3e-59 WIN1 HOPW1-1-interacting 1 (.1) AT3G08860 160 / 2e-43 PYD4 PYRIMIDINE 4 (.1) AT4G39660 157 / 2e-42 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT2G38400 156 / 2e-42 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G22200 144 / 1e-37 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT5G63570 126 / 2e-31 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT3G48730 124 / 9e-31 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G57590 55 / 8e-08 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053500 [exp] 201 / 5e-59 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 191 / 3e-55 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.007G085600 [exp] 159 / 2e-43 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.016G018500 [exp] 152 / 2e-40 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G106800 [exp] 151 / 2e-40 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 149 / 1e-39 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.006G020900 [exp] 145 / 3e-38 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.015G101100 [exp] 119 / 4e-29 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.005G082100 [exp] 77 / 8e-16 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023299 [exp] 761 / 0 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 761 / 0 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10031196 [exp] 191 / 3e-55 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10008025 [exp] 191 / 2e-54 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10025262 [exp] 163 / 1e-44 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10004480 [exp] 159 / 2e-43 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 159 / 3e-43 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10003810 [exp] 143 / 3e-37 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 143 / 3e-37 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10009086 [exp] 130 / 3e-33 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.011G082800.2 pacid=42781107 polypeptide=Potri.011G082800.2.p locus=Potri.011G082800 ID=Potri.011G082800.2.v4.1 annot-version=v4.1 ATGGCAACAAGCAAGAGACCTTTGCAGCGTTTATTGAGCAGAGTTTGCAGGGAGGCTCGGAGGACTTACGGGGTTCTCCCTCAAGGACATGGACACGACC CTTCTTTTTCTCAACATCTCATCAACTTGGAGTATGAATACAGTGCCCACAATTACCATCCAGTTCCAATCGTATTCTCTAAAGCGAAGGGATCCTGTAT ATGGGACCCTGAGGGCAACAAATACCTGGATTTTCTCTCTGCATATTCAGCAGTTAATCAGGGACATTGTCATCCAAGGATCATGAAAGCATTACAGGAA CAAGCAGAAAAGCTCACTCTCAGCTCTAGAGCTTTCTATAATGATAGATTTCCAGTATTTGCAGAGCACCTAACAAACATGTTTGGCTATGATATGGTGC TACCAATGAACACTGGTGCTGAGGGTGTGGAAACAGCTTTGAAGTTGGCAAGGAAATGGGGATATGAAAAGAAAAAAATCCCCATTGATGAGGCCATAAT CATCTCTTGTTGTGGCTGCTTTCATGGCCGTACATTGGCTGCCATCTCAATGAGCTGTGACAATGAGGCTACTCGAGGGTTTGGGCCATTGCTTTCTGGC CATCTTAAAGTTGATTTTGGTGATGTAGTTTCACTGGAGAAAAGTTTTAGAGAACAAGGAGATCGGATAGCTGGATTTCTTTTTGAACCAATTCAAGGCG AGGCTGGGGTTATAATTCCTCCAGATGGTTACTTAAAATCTGTCAGAGATCTTTGCTCAAAATACAATGTTCTGATGATTGCTGATGAAATTCAAACTGG CTTAGCACGAACAGGAAAAATGCTGGCTTGTGATTGGGAACAAGTTCGTCCTGATGTAGTAATTCTAGGAAAGGCATTGGGTGGTGGAGTGATACCTGTA AGTGCTGTGCTTGCAGATAAAGATGTAATGCTTTGCATTCGACCAGGAGAGCATGGAAGCACATTTGGGGGAAATCCTTTAGCCAGTGCAGTTGCCATTG CTTCACTAGATGTGATCAAAGAAGAAGGGCTTGCTGAGAGATCCTACCATTTGGGGAAAGAACTCAGGCATCAGCTACTTAAGGTTCAGCAACAGTTTCC AGACATCATTAAGGAAGTTCGAGGTAGAGGTTTGTTCAATGCTGTGGAGTTCAACAGCAAGACTTTGTCCCCTGTTTCTGCATATGATATTTGTCTGAAG TTGAAGGAAAGAGGAGTTCTTGCTAAGCCTACACATGACACTATTGTCCGGTTAACTCCTCCACTTTCCATTAGTTCGGATGAGCTCCAAGAAGGATCAA AGACTCTGCATGAAGTTCTGGAACTTGATCTACCAAAGATGAAGGCGGCCAAACCAGAAAAGATGCCAATTGCTTCCACCACATGTGACCGTTGTGGGCG AAACCAGTAA
AA sequence Show only first row Show all	>Potri.011G082800.2 pacid=42781107 polypeptide=Potri.011G082800.2.p locus=Potri.011G082800 ID=Potri.011G082800.2.v4.1 annot-version=v4.1 MATSKRPLQRLLSRVCREARRTYGVLPQGHGHDPSFSQHLINLEYEYSAHNYHPVPIVFSKAKGSCIWDPEGNKYLDFLSAYSAVNQGHCHPRIMKALQE QAEKLTLSSRAFYNDRFPVFAEHLTNMFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPIDEAIIISCCGCFHGRTLAAISMSCDNEATRGFGPLLSG HLKVDFGDVVSLEKSFREQGDRIAGFLFEPIQGEAGVIIPPDGYLKSVRDLCSKYNVLMIADEIQTGLARTGKMLACDWEQVRPDVVILGKALGGGVIPV SAVLADKDVMLCIRPGEHGSTFGGNPLASAVAIASLDVIKEEGLAERSYHLGKELRHQLLKVQQQFPDIIKEVRGRGLFNAVEFNSKTLSPVSAYDICLK LKERGVLAKPTHDTIVRLTPPLSISSDELQEGSKTLHEVLELDLPKMKAAKPEKMPIASTTCDRCGRNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Potri.011G082800 [exp]	0	1
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.003G126100 [exp]	1.00	0.8677
AT1G45230			Protein of unknown function (D...		Potri.002G125700 [exp]	11.40	0.8312
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.012G099600 [exp]	11.48	0.8233
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120600 [exp]	17.43	0.7956
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Potri.018G001600 [exp]	17.54	0.7762
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G138400 [exp]	21.00	0.8158
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.001G193300 [exp]	23.23	0.8119
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.008G059100 [exp]	24.97	0.8218
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076700 [exp]	25.45	0.7881	Pt-CYP89.3
AT4G32900			Peptidyl-tRNA hydrolase II (PT...		Potri.006G237900 [exp]	26.15	0.7349

Compare expression of checked genes

Potri.011G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.