Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46170 488 / 7e-173 F-box family protein (.1) AT4G18380 450 / 5e-158 F-box family protein (.1.2) AT1G30200 432 / 3e-151 F-box family protein (.1.2) AT1G78100 160 / 1e-45 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1) AT1G22220 158 / 5e-45 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065900 [exp] 544 / 0 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.002G094600 [exp] 176 / 6e-52 AT1G78100 292 / 9e-98 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.005G166500 [exp] 152 / 7e-43 AT1G22220 295 / 1e-99 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.009G047600 [exp] 147 / 8e-41 AT4G18380 197 / 4e-60 F-box family protein (.1.2) Potri.003G203000 [exp] 45 / 6e-05 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023298 [exp] 456 / 2e-159 AT5G46170 505 / 4e-179 F-box family protein (.1) Lus10038511 [exp] 444 / 4e-157 AT5G46170 453 / 5e-161 F-box family protein (.1) Lus10041123 [exp] 137 / 4e-37 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10036451 [exp] 132 / 3e-35 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10013431 [exp] 98 / 4e-23 AT4G18380 102 / 4e-25 F-box family protein (.1.2) Lus10040978 [exp] 45 / 1e-05 AT4G18380 44 / 7e-06 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G082900.1 pacid=42781670 polypeptide=Potri.011G082900.1.p locus=Potri.011G082900 ID=Potri.011G082900.1.v4.1 annot-version=v4.1 ATGAGCTCCCTTCGTCCAGATCCGACCTCCAGAATTCACCCTGAGCCTGAACCAACTACTACTACTTCCTCTCCTTCAATCGACCATTTCGACCGCCTTC CTGACTCTCTTCTCTTACTCGTTTTCAACAAAATCGGCGATGTCAAAGCTCTCGGTCGCTGCTGTGTTGTTTGTCTCCGCTTCCACTCTCTTGTCCCTCA AGTCGACAACGTTGTTGTCCGTGTCGACTGTGTCATCTCCGATGATGACACCTCCTCCTCCTCCTCCTCCACAAAGTCACACTCTCCCTCCTCTTCTTCT GGATTCTCCTCCATCTTTCGATTAGTCTTCGGTGGCATTGTCAAACCCTTCCAAGTTCTGGGTCAGCTGCTTGGGCCCAAGGTTAATTCGCGAAATGGGT TTCTCAATTCTTCGCTCTCTGTCGGCACCACCACGAGCACCGACGATGATACGGAACCGGATCAAGGTGGTGTCACCCATCATTCTCCAACTCAGGTTCT TAAGAATTTTAATGAGATTCGGTTTCTGCGAATCGAGTTACCCAGTGGGGAATTGGGGATTGATGATGGGGTTCTTTTAAAATGGAGGGCTGATTTCGGA TCTACACTTGATAATTGTGTTATCCTTGGTGCTGCTTCTGTCTTTACCAATAATAAGAATTCTTTTGTTATGCAAGAAAATGATGCTATATGCAACAGTA CTGCTGCTATTAATAATAATAATGGTGTTGATGATAATGGAAGCATACCAGAGTCGTTTTACACCAATGGGGGATTGAAGTTGAGAGTGGTGTGGACTAT TAGCTCTTTAATTGCTGCATCTGCTAGGCATTATTTGCTTCAACCAATTATTGCTGAGCATAAGACTCTTGATAGTTTGGTATTGACTGACGCTGACGGG CAGGGAGTCTTGCGTATGAACAGGGAGCAACTGGAGGAGTTGAGGGTGAAGCCATTATCGGCTTCTTCTGCTTCGAAGAGGACTCTTGTGCCTGCATTGA ATATGCGGCTTTGGTATGCTCCTCACTTGGAATTGCCTGATGGGGTTGTGCTGAAAGGGGCTACTTTGGTTGCTATTAGGCCTAGTGACCAGGCTGCTAC TAAAAAGGATGTGTCTGATATCTCATGCCTGTCCACTGCATTTGAGGAGCCTTATGGTACCGCAGCTAAGATGCTGGTGAAGAGGAGGACTTACTGCTTG GAGATGAACTCATTCTGA
AA sequence Show only first row Show all	>Potri.011G082900.1 pacid=42781670 polypeptide=Potri.011G082900.1.p locus=Potri.011G082900 ID=Potri.011G082900.1.v4.1 annot-version=v4.1 MSSLRPDPTSRIHPEPEPTTTTSSPSIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVCLRFHSLVPQVDNVVVRVDCVISDDDTSSSSSSTKSHSPSSSS GFSSIFRLVFGGIVKPFQVLGQLLGPKVNSRNGFLNSSLSVGTTTSTDDDTEPDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFG STLDNCVILGAASVFTNNKNSFVMQENDAICNSTAAINNNNGVDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADG QGVLRMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSDQAATKKDVSDISCLSTAFEEPYGTAAKMLVKRRTYCL EMNSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	0	1
AT4G32750			unknown protein		Potri.006G241200 [exp]	1.00	0.8580
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.008G179700 [exp]	2.44	0.8114
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G101800 [exp]	4.47	0.7727
AT4G10925			Nuclear transport factor 2 (NT...		Potri.001G089600 [exp]	4.89	0.7721
AT3G47610			transcription regulators;zinc ...		Potri.012G068900 [exp]	6.32	0.7552
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.002G117400 [exp]	6.63	0.8159
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.001G093800 [exp]	10.39	0.7100
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.015G106200 [exp]	11.95	0.7378
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	18.33	0.7750
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	21.49	0.6912

Compare expression of checked genes

Potri.011G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.