Plant FIBer expression Database

Potri.011G083900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30135 69 / 1e-15 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8 (.1)
AT2G34600 60 / 6e-12 ZIM TIFY5B, JAZ7 jasmonate-zim-domain protein 7 (.1)
AT3G22275 41 / 4e-05 unknown protein
AT5G13220 39 / 0.0005 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G023301
[exp]
72 / 5e-17 AT1G30135 73 / 2e-17 jasmonate-zim-domain protein 8 (.1)
Potri.003G165000
[exp]
44 / 1e-05 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Potri.001G062500
[exp]
40 / 0.0003 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038506
[exp]
57 / 8e-11 AT1G30135 57 / 4e-11 jasmonate-zim-domain protein 8 (.1)
Lus10023303
[exp]
48 / 3e-07 AT1G30135 59 / 1e-11 jasmonate-zim-domain protein 8 (.1)
Lus10002576
[exp]
38 / 0.001 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06200 tify tify domain
CL0281 CCT PF09425 Jas_motif Jas motif
Representative CDS sequence
>Potri.011G083900.1 pacid=42781976 polypeptide=Potri.011G083900.1.p locus=Potri.011G083900 ID=Potri.011G083900.1.v4.1 annot-version=v4.1
ATGAAGAGAAACTGCAATCTCGAACTCCGCCTCCATACTCCAGCGGATTCCGACAACCACCACCACCGTTACCAACCCCTGGTGGAGGCGTCGAATGAGA
GCCGACAATTAGAACTTGAACAACAAGAGCAGAAGCAGCTAACTATTTTTTACAATGGGAGGGTTTTAGTTTGTGATGTTGCAGAACTGCAGGCTAGAGC
AATCCTAATGCTTGCAAGTCGAGAAATGGAGGATAGATTGCGAAGCCCAGTCGGGTCGGAGCCATCTGCTTCCTCACCGATCTCACCATCTCAGCTTTAC
AGTCCGGTTGGTCTTCCAATGAAGAGATCACTACAAAGGTTCCTCAAGAAGCGAAAGCATCGGATCCAAGCAACTTTCCCTTGCAAAGTTAAAAACGAGT
TAACGCAGACTGGAAGATTGAGGAACTTTGTCTCGAGAGAAGATCAATGA
AA sequence
>Potri.011G083900.1 pacid=42781976 polypeptide=Potri.011G083900.1.p locus=Potri.011G083900 ID=Potri.011G083900.1.v4.1 annot-version=v4.1
MKRNCNLELRLHTPADSDNHHHRYQPLVEASNESRQLELEQQEQKQLTIFYNGRVLVCDVAELQARAILMLASREMEDRLRSPVGSEPSASSPISPSQLY
SPVGLPMKRSLQRFLKKRKHRIQATFPCKVKNELTQTGRLRNFVSREDQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Potri.011G083900
[exp]
0 1
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Potri.014G046900
[exp]
1.00 0.9889 ERF11,Pt-EREBP1.3
Potri.010G078950
[exp]
2.82 0.9599
AT2G33060 AtRLP27 receptor like protein 27 (.1) Potri.012G025300
[exp]
3.00 0.9446
AT1G19180 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1... Potri.001G166200
[exp]
3.46 0.9586
AT1G64720 CP5 Polyketide cyclase/dehydrase a... Potri.011G151500
[exp]
4.47 0.9203 CP5.1
AT5G09360 LAC14 laccase 14 (.1) Potri.019G088900
[exp]
4.89 0.9481
AT5G09360 LAC14 laccase 14 (.1) Potri.019G088800
[exp]
5.00 0.9520
AT3G18360 VQ motif-containing protein (.... Potri.015G046600
[exp]
6.63 0.9540
Potri.010G150750
[exp]
6.92 0.9451
AT3G29000 Calcium-binding EF-hand family... Potri.008G087900
[exp]
11.48 0.9396

Potri.011G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.