Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30100 799 / 0 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G14440 796 / 0 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT4G18350 774 / 0 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT1G78390 773 / 0 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G24220 597 / 0 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G19170 363 / 4e-118 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G63520 325 / 4e-104 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G32810 109 / 5e-25 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT2G44990 43 / 0.0005 MAX3, CCD7, ATCCD7 carotenoid cleavage dioxygenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112400 [exp] 832 / 0 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G393800 [exp] 830 / 0 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.003G176300 [exp] 626 / 0 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.019G093400 [exp] 365 / 1e-118 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 360 / 5e-117 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 358 / 3e-116 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 357 / 2e-115 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 350 / 2e-113 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265600 [exp] 331 / 2e-106 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026185 [exp] 642 / 0 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10023673 [exp] 606 / 0 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 558 / 0 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10035696 [exp] 355 / 8e-115 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10042482 [exp] 326 / 5e-107 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10029513 [exp] 332 / 1e-104 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 314 / 1e-99 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 317 / 1e-96 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10042481 [exp] 261 / 3e-84 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10008443 [exp] 228 / 1e-68 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.011G084100.1 pacid=42781927 polypeptide=Potri.011G084100.1.p locus=Potri.011G084100 ID=Potri.011G084100.1.v4.1 annot-version=v4.1 ATGGCTGCTTCTAATACACCCTACTCCGGTGTTAGGGCCAAAACACAAATCCCTCATCATCTCTCCTCTTCAATAGTGGATTTGGGCTCCATCTCCTTCA ACAAGAGCAAGTCTAATAGTAAAAAAACGAAAATCCACTCTACTCTACACTCTCCTTCTGTTCTCCATTTCCCAACACAACCAGGAACTTCCGAAGAAGA CTCCTCGGTAACTGTAAATCCAAAAACCAACCGTTACCAACCACTGTGGAATTTCCTTCAAAGAGCAGCAGCTACAGCCTTAGACATGGCAGAAGCTGCG TTGGTCTCACACGAGCGCCAACGCCCACTTCCCAAAACAGTGGACCCACGCGTTCAAATTGCAGGAAACTTCTCTCCCGTGCAGGAGCAGAAAGTCCGGC GATCGCTCCCCGTGACCGGAACAATCCCCGAATGCATTGATGGCATTTATGTCCGGAATGGAGCAAACCCTCTTCTTGAGCCCGTCGCCGGTCATCACTT CTTCGATGGAGACGGCATGGTCCACGCTATGAAAATTGAGAAAGGCAGTGCAAGCTATTCTTGTCGTTTCACTGAAACGGAAAGGCTAAAACAAGAGAGA GGACGCGGTCGGCCAGTGTTTCCTAAAGCAATTGGGGAGCTACATGGTCACTCTGGTATCGCAAGATTGCTCCTATTCTATGCTAGAGGACTATGTGGGC TTCTTGATCATACAAAAGGAACTGGAGTGGCGAACGCAGGCTTGGTCTACTTCAATGACAGGCTTCTTGCCATGTCTGAAGATGATCTTCCTTACCAAGT ACGAATCACTCCTTGCGGTGATCTTGAAACTGTTGGTAGATACAATTTCAATAGCCAACTTAAGCATTCTATGATTGCACACCCAAAGATTGATCCAGTT TCTAAAGAGCTCTTTGCTTTGAGCTACAACGTTGTTCAGAAGCCGTATCTAAAGTACTTTCGCTTCTTTCCGGACGGTAAAAAATCACCAGACATTGATA TACCTCTACCAGTCCCAACCATGATGCATGATTTTGCTATCACTGAGAATTTCGTGGTGATCCCTGACCAACAAGTGGTATTCAAGCTTCAAGAAATGCT AAGAGGTGGCTCTCCTGTTATTTACGATAAGAACAAGAAATCTCGGTTTGGAGTTCTTAACAAGAATGCTACTGATGCCAAGGACATAATTTGGGTGGAA TCGCCGGGTACTTTCTGCTTCCATTTATGGAATGCATGGGAAGAGCCAGAATCCAACGAAGTTGTGGTTATTGGGTCTTGCATGACTCCACCGGACTCCA TTTTCAACGATTACGACGAGAGTTTAAAGAGTGTGTTATCAGAAATCCGGCTGAATTTAAAGACAGGTAAGTCCACTCGCCGCCCCATTATTCAGGAATC ATCAAATCATGTTAATTTAGAGGCTGGGATGGTGAACCGGAATCGGCTTGGAAGACAGACAAATTACGCTTACCTAGCAATCGCCGAGCCTTGGCCTAAG GTTTCAGGTTTTGCCAAGGTCGATCTTTTCACTGGGGAGGTTAAAAAGTACATGTATGGTAATAAAAGTTATGGTGGTGAGCCCTTTTTCTTGCCAACAA ATCAAAATTGCGAAACAGAAGATGACGGTTACATTCTTGCTTTCGTTCATGATGAGAAGACATGGAAGTCGGAGCTTCAGATAGTGAATGCTAAGAATTT ACAGTTAGAAGCTTCAGTTAGGCTGCCATCGAGGGTTCCGTACGGTTTTCATGGCACTTTTATTGACAGAAGGGGGTTGGTGAATCAGGCATAG
AA sequence Show only first row Show all	>Potri.011G084100.1 pacid=42781927 polypeptide=Potri.011G084100.1.p locus=Potri.011G084100 ID=Potri.011G084100.1.v4.1 annot-version=v4.1 MAASNTPYSGVRAKTQIPHHLSSSIVDLGSISFNKSKSNSKKTKIHSTLHSPSVLHFPTQPGTSEEDSSVTVNPKTNRYQPLWNFLQRAAATALDMAEAA LVSHERQRPLPKTVDPRVQIAGNFSPVQEQKVRRSLPVTGTIPECIDGIYVRNGANPLLEPVAGHHFFDGDGMVHAMKIEKGSASYSCRFTETERLKQER GRGRPVFPKAIGELHGHSGIARLLLFYARGLCGLLDHTKGTGVANAGLVYFNDRLLAMSEDDLPYQVRITPCGDLETVGRYNFNSQLKHSMIAHPKIDPV SKELFALSYNVVQKPYLKYFRFFPDGKKSPDIDIPLPVPTMMHDFAITENFVVIPDQQVVFKLQEMLRGGSPVIYDKNKKSRFGVLNKNATDAKDIIWVE SPGTFCFHLWNAWEEPESNEVVVIGSCMTPPDSIFNDYDESLKSVLSEIRLNLKTGKSTRRPIIQESSNHVNLEAGMVNRNRLGRQTNYAYLAIAEPWPK VSGFAKVDLFTGEVKKYMYGNKSYGGEPFFLPTNQNCETEDDGYILAFVHDEKTWKSELQIVNAKNLQLEASVRLPSRVPYGFHGTFIDRRGLVNQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30100		ATNCED5, NCED5	nine-cis-epoxycarotenoid dioxy...		Potri.011G084100 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241900 [exp]	80.04	0.4991
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Potri.007G012100 [exp]	80.82	0.4757
AT2G19320			unknown protein		Potri.006G073300 [exp]	150.24	0.4460
AT2G37960			unknown protein		Potri.016G109100 [exp]	181.41	0.4502
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.006G164350 [exp]	225.00	0.4238
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.018G125900 [exp]	238.02	0.4196
AT1G04645			Plant self-incompatibility pro...		Potri.018G148630 [exp]	238.58	0.4196
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G018805 [exp]	248.95	0.4081
AT1G68510	AS2	LBD42	LOB domain-containing protein ...		Potri.008G120600 [exp]	260.98	0.4135

Compare expression of checked genes

Potri.011G084100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.