Plant FIBer expression Database

Potri.011G084150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG01010 336 / 2e-111 ATCG01010.1, NDHF NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein (.1)
ATMG00513 79 / 9e-17 NAD5.1, ATMG00513.1, NAD5A NADH DEHYDROGENASE 5.1, NADH DEHYDROGENASE SUBUNIT 5, NADH dehydrogenase 5A (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G342933
[exp]
429 / 7e-148 ATCG01010 989 / 0.0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0425 ComplexI-N PF00361 Proton_antipo_M Proton-conducting membrane transporter
CL0425 PF00662 Proton_antipo_N NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
Representative CDS sequence
>Potri.011G084150.1 pacid=42781628 polypeptide=Potri.011G084150.1.p locus=Potri.011G084150 ID=Potri.011G084150.1.v4.1 annot-version=v4.1
ATGGAACATACATATCAATATTTATGGATTATATCTTTCGTTACACTTCCAGTCCCCATGTTAATAGGAATGGGACTGCTACTTTTTCCAGTGTCAACAA
AAAAGCTTCACCGTATATGGGCTTTTCCTAGTGTTTTATTGTTAAGTATAGTTATGGTTTTTTCGATCGATCTGTTTATTCAGCAAATAAATAGCAGTTC
CATTTATCAATATGTATGGTCTTGGACCATCAACAATGATTTTTCCTTAGAGTTCGAGCACTTGATTGACCCACTTACTTCTATTTTGTTAATATTAATT
ACTATGGTTGGAATTTTGGTTCTTGCTTATAGTGACAGTTATATGTCTCATGATCAAGGCTATTTGAGATTTTTTGTTTATATGAGTTTTTTCAATACTT
CAATGCTGGGATTAGTTACCAATTCGAATTTAATCCAAATTTATATCTTTTGGGAATTGGTTGGAATGTGCTCTTACCTATTAATAGGTTTTTGGTTCAC
ACGACCTATTGTATCCAATGCTTGTCAAAAAGCATTCATAACAAGCAGTTTCAAATTTCAGGATTTGTTTGAAATATTTAATAACTTGATTTATAATAAT
GATAATGAGGTTCATTTTTTATTTGTTACCTTGTGCGCTTTCCTATTATTTTCCGGTGCAATTGCTAAATCGGCCTAA
AA sequence
>Potri.011G084150.1 pacid=42781628 polypeptide=Potri.011G084150.1.p locus=Potri.011G084150 ID=Potri.011G084150.1.v4.1 annot-version=v4.1
MEHTYQYLWIISFVTLPVPMLIGMGLLLFPVSTKKLHRIWAFPSVLLLSIVMVFSIDLFIQQINSSSIYQYVWSWTINNDFSLEFEHLIDPLTSILLILI
TMVGILVLAYSDSYMSHDQGYLRFFVYMSFFNTSMLGLVTNSNLIQIYIFWELVGMCSYLLIGFWFTRPIVSNACQKAFITSSFKFQDLFEIFNNLIYNN
DNEVHFLFVTLCAFLLFSGAIAKSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG01010 ATCG01010.1, ND... NADH-Ubiquinone oxidoreductase... Potri.011G084150
[exp]
0 1
AT1G55260 Bifunctional inhibitor/lipid-t... Potri.003G217000
[exp]
5.74 0.9505
AT5G45820 PKS18, CIPK20, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.011G067500
[exp]
10.14 0.9580 Pt-CIPK20.1
AT1G75250 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-... Potri.004G155866
[exp]
14.35 0.9523
AT4G39230 NmrA-like negative transcripti... Potri.013G104000
[exp]
14.49 0.9473
AT2G34430 LHCB1.4, LHB1B1 light-harvesting chlorophyll-p... Potri.011G079500
[exp]
17.34 0.9470 Lhcb1-1,Pt-LHB1.2
AT1G58684 Ribosomal protein S5 family pr... Potri.001G256800
[exp]
19.59 0.9467
AT2G06510 ATRPA70A, ATRPA... ARABIDOPSIS THALIANA RPA70-KDA... Potri.018G065300
[exp]
26.83 0.9421
AT1G30380 PSAK photosystem I subunit K (.1) Potri.018G027600
[exp]
28.72 0.9394 Pt-PSAK.1
AT4G14890 FdC2 ferredoxin C 2, 2Fe-2S ferredo... Potri.010G087300
[exp]
29.69 0.9399
AT5G41761 unknown protein Potri.014G095100
[exp]
30.93 0.9431

Potri.011G084150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.