Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46210 1250 / 0 CUL4, ATCUL4 cullin4 (.1) AT1G69670 517 / 4e-173 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT1G26830 517 / 4e-173 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT4G02570 382 / 4e-121 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 333 / 1e-102 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 305 / 4e-92 Cullin family protein (.1) AT4G12100 186 / 1e-51 Cullin family protein (.1) AT3G46910 122 / 6e-31 Cullin family protein (.1) AT2G04660 68 / 2e-11 APC2 anaphase-promoting complex/cyclosome 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132900 [exp] 1476 / 0 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.010G093200 [exp] 525 / 2e-176 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.008G148300 [exp] 524 / 7e-176 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.003G115500 [exp] 397 / 7e-127 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 385 / 3e-122 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217300 [exp] 371 / 7e-117 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 368 / 8e-116 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G089600 [exp] 57 / 4e-08 AT2G04660 1178 / 0.0 anaphase-promoting complex/cyclosome 2 (.1) Potri.005G027900 [exp] 51 / 1e-06 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023306 [exp] 1162 / 0 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 991 / 0 AT5G46210 913 / 0.0 cullin4 (.1) Lus10036739 [exp] 518 / 1e-173 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 516 / 6e-173 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 515 / 2e-172 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 509 / 5e-170 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10024562 [exp] 374 / 6e-118 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 371 / 7e-117 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 371 / 7e-117 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 362 / 1e-113 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family CL0123 [poplar] [flax] HTH PF10557 [poplar] [flax] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Potri.011G084400.1 pacid=42780361 polypeptide=Potri.011G084400.1.p locus=Potri.011G084400 ID=Potri.011G084400.1.v4.1 annot-version=v4.1 ATGTCTCTCCCCACCAAACGCTCAGCCACAGCCACCACTAGCACCGCCGGTACTTCCACCTCTAATACTTACCCTCCAATGAAGAAGGCCAAGTGTCAGG CCGCCTCTGCCTGCTCACCTCTCGACTACAACAAAAACGGCCTCCATCACTCCGATGACGTCGTCTTCGATCCTTCCTCCATGTCTCTCGACGACGATCC CAAGCTCGTCGACTACCGCCCTCCTCCCGCCGCCGCTAATTTGTCTCGCAAAAAAGCTACTCTTCCACAGCCCGCTAAGAAGCTCGTCATCAAGCTCGTC AAGGCTAAACCAACTCTGCCCACAAATTTTGAGGAGGATACATGGGCAAAGCTGCAGTCAGCTATTAAGGCTATATTCTTGAAACAACCAGCTCTTTGTG ACTTAGAGAAGCTTTATCAGGCTGTCAATGATCTGTGCCTGCATAAGATGGGGGGGAATCTTTATCTACGAATTGAAAAGGAGTGTGAAGCACATATATC TGCAGCTTTACAATCCTTAGTTGGTCAAAGCCCAGATTTGGAGGTTTTCTTAAAACTTGTTGCAACGTGCTGGAAGGATCTCTGTGACCAGATGTTGATG ATCCGTGGCATAGCCTTGTATCTGGACAGAACATATGTGAAACAAACCCCAAATGTGCGTTCATTGTGGGACATGGGCTTGCAGCTTTTCCGCAAACATC TTTCTTTGTCTCCTGAAGTTGAGCACAAAACTGTCACTGGCATCTTGCGAATGATTGAGAGGGAAAGATTAGGTGAATCAGCTGATAGATCTCTCCTTGA CCATCTCTTGAAGATGTTCACTTCACTAGGAATTTATGCAGAAAGTTTTGAAAGACCTTTCCTTGAGTGCACATCTGAATTCTATGCTGCTGAAGGCATG AAATACATGCAGCAATCGGATGTTCCAGATTACTTGAAGCACGTGGAGTCAAGATTGAATGAAGAACAAGATCGATGTAATATTTACATTGATGCAAGCA CTAAAAAGCCACTAATAGCAACTGCAGAAACGCAGCTACTTGAACGCCATATATCCGCGATTCTTGATAAGGGGTTCATGATGCTGATGGATGGACATCG GATTAAGGACCTTCAGACAATGTACTCATTGTTTTTAAGGGTCAATGCCCTTGAGTCATTAAGGCAGGCCCTTAGCATGTACATCAGAAGAACCGGGCAG GGCATTGTCATGGATGAAGAGAAGGACAAAGATATGGTTTCCTCCCTGTTAGAATTTAAGGCTTCTCTTGACTCAATATGGGAAGAAAGCTTCTCCAAGA ATGAAGGATTCTGCATCACCATAAAGGATGCATTTGAGCATCTAATTAATCTTCGCCAGAACCGTCCTGCTGAGCTGATTGCAAAGTTTTTGGACGAGAA GCTTCGTGCTGGGAATAAGGGTACATCCGAGGAAGAGTTGGAGGGTACACTTGATAAAGTTTTGGTTTTATTCAGGTTTATTCAGGGTAAGGATGTCTTT GAAGCATTTTATAAGAAGGATCTTGCAAAAAGACTGCTGTTGGGAAAAAGCGCTTCTATTGATGCAGAGAAATCTATGATATCTAAGCTGAAAACTGAAT GTGGTAGCCAGTTTACAAACAAGCTTGAAGGAATGTTTAAGGATATTGAACTATCAAAGGAGATAAATGAGTCCTTCCGACAATCATCTCAGGCCAGGAC AAAACTTCCATCAGGGATTGAAATGAGTGTACATGTTTTAACCACTGGGTACTGGCCCACATATCCACCCATGGATGTTAGGCTTCCTCATGAGCTGAAT GTTTATCAGGATATATTCAAAGAATTCTACTTAAGCAAGTATAGTGGAAGGCGCTTAATGTGGCAAAACTCATTGGGTCATTGTGTATTGAAAGCTGAGT TTCCAAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGACTGTCGTTCTGATGCTGTTTAATGATGCCCAAAAGCTTAGTTTTCAAGATATCAAAGA CTCTACTGGCATAGAAGACAAGGAGCTTAGAAGAACTTTGCAGTCTCTGGCATGTGGAAAAGTTCGGGTTCTGCAAAAGCTGCCCAAAGGGAGGGATGTG GAGGAGGATGATTCCTTTGTGTTCAATGAAGGATTTACAGCTCCACTCTATCGAATAAAGGTCAATGCAATCCAGATGAAGGAAACTGTAGAAGAGAACA CAAGCACCACTGAGAGAGTGTTTCAGGATCGTCAATACCAGGTCGATGCTGCGATTGTTCGGATAATGAAGACAAGGAAAGTGCTAAGTCACACGCTTCT TATAACTGAACTATTCCAGCAGCTGAAGTTTCCTATAAAGCCGGCTGATTTGAAGAAAAGGATAGAAAGTCTTATCGACAGGGAATACCTGGAGCGAGAC AAGAACAACCCTCAGATATACAATTACTTGGCTTAA
AA sequence Show only first row Show all	>Potri.011G084400.1 pacid=42780361 polypeptide=Potri.011G084400.1.p locus=Potri.011G084400 ID=Potri.011G084400.1.v4.1 annot-version=v4.1 MSLPTKRSATATTSTAGTSTSNTYPPMKKAKCQAASACSPLDYNKNGLHHSDDVVFDPSSMSLDDDPKLVDYRPPPAAANLSRKKATLPQPAKKLVIKLV KAKPTLPTNFEEDTWAKLQSAIKAIFLKQPALCDLEKLYQAVNDLCLHKMGGNLYLRIEKECEAHISAALQSLVGQSPDLEVFLKLVATCWKDLCDQMLM IRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKHLSLSPEVEHKTVTGILRMIERERLGESADRSLLDHLLKMFTSLGIYAESFERPFLECTSEFYAAEGM KYMQQSDVPDYLKHVESRLNEEQDRCNIYIDASTKKPLIATAETQLLERHISAILDKGFMMLMDGHRIKDLQTMYSLFLRVNALESLRQALSMYIRRTGQ GIVMDEEKDKDMVSSLLEFKASLDSIWEESFSKNEGFCITIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVF EAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFRQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELN VYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDV EEDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD KNNPQIYNYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	0	1
AT2G39950			unknown protein		Potri.008G064500 [exp]	3.87	0.8091
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	10.24	0.7382
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.018G064500 [exp]	10.95	0.7528
AT5G15400			U-box domain-containing protei...		Potri.017G089600 [exp]	12.36	0.7220
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G028800 [exp]	12.64	0.6968	SNF4.3
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	13.30	0.7799
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	13.34	0.7822
AT2G33700			Protein phosphatase 2C family ...		Potri.005G253700 [exp]	15.87	0.6600
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	20.59	0.6494
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	24.00	0.6694

Compare expression of checked genes

Potri.011G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.