Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30070 285 / 2e-98 SGS domain-containing protein (.1.2) AT1G30060 57 / 5e-10 COP1-interacting protein-related (.1) AT4G23570 42 / 0.0002 SGT1A phosphatase-related (.1.2.3) AT4G11260 40 / 0.0008 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038500 [exp] 270 / 1e-92 AT1G30070 290 / 1e-100 SGS domain-containing protein (.1.2) Lus10023310 [exp] 233 / 4e-73 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027540 [exp] 45 / 3e-05 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10039297 [exp] 43 / 0.0001 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10024680 [exp] 41 / 0.0004 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10010669 [exp] 39 / 0.0007 AT3G03773 223 / 6e-76 HSP20-like chaperones superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF04969 [poplar] [flax] CS CS domain CL0190 [poplar] [flax] PF09032 [poplar] [flax] Siah-Interact_N Siah interacting protein, N terminal
Representative CDS sequence Show only first row Show all	>Potri.011G085100.1 pacid=42780323 polypeptide=Potri.011G085100.1.p locus=Potri.011G085100 ID=Potri.011G085100.1.v4.1 annot-version=v4.1 ATGGCCGAAGATTTGGCGTTGGATTTACAAGAGTTGAGGCAGTTAGGGAGCATCGCGAAAAGACCTCGTGTCATTTCTCTCATCTCCTCTGAGATTAGCC ACTTGGAGAAGTTATCAAAGGAACATGTTTCTGATCCACATGCAACTTCTACTCCTATTCAAACTCCTATCTCATCTGGGGTTAAGCTGCCTTCATCCCT TGCAATTAATTATGTTACGCTTGGATCGTTCAGTTGGGATCAGGACAATGATAAAGTCAAGATATATGTCTCTCTAGAGGGTGTCGGGAGAGAAAAGATT GAGTCGGAGTTCCAGGCAATGTCATTTGATGTTAAATTCCATGATGTCCAAGGAAAGAACTATCGATGTGCTATACCAAAACTGAACAAGGAGATTGTAC CAGAGAAATGCTTAGTGGTGGTTAAGCCTAAAAGAGTGATCATCACATTGTTTAAAGCTTCAAAGGGGAACTGGTTAGACATACATTTCAAGGACGATAA GCTAAAACCAAATCTGGATGAGAAACGAGATCCTATGGCTGGAATTATGGACTTAATGAAGAATATGTATGATGACGGGGATGAAGACATGAAACGAACG ATTGCAAAAGCATGGACTGATGCAAGATCTGGGAATGCAGCTGACCCTTTGAAGGGGTATCGTTAA
AA sequence Show only first row Show all	>Potri.011G085100.1 pacid=42780323 polypeptide=Potri.011G085100.1.p locus=Potri.011G085100 ID=Potri.011G085100.1.v4.1 annot-version=v4.1 MAEDLALDLQELRQLGSIAKRPRVISLISSEISHLEKLSKEHVSDPHATSTPIQTPISSGVKLPSSLAINYVTLGSFSWDQDNDKVKIYVSLEGVGREKI ESEFQAMSFDVKFHDVQGKNYRCAIPKLNKEIVPEKCLVVVKPKRVIITLFKASKGNWLDIHFKDDKLKPNLDEKRDPMAGIMDLMKNMYDDGDEDMKRT IAKAWTDARSGNAADPLKGYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30070			SGS domain-containing protein ...		Potri.011G085100 [exp]	0	1
AT1G23100			GroES-like family protein (.1)		Potri.008G130500 [exp]	1.00	0.9862
AT2G45380			unknown protein		Potri.014G069100 [exp]	3.46	0.9705
AT2G35795			Chaperone DnaJ-domain superfam...		Potri.012G038800 [exp]	7.14	0.9527
AT5G58110			chaperone binding;ATPase activ...		Potri.006G080900 [exp]	7.41	0.9277
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.006G081001 [exp]	9.94	0.9631
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Potri.018G075200 [exp]	10.00	0.9567
AT3G45180			Ubiquitin-like superfamily pro...		Potri.004G211600 [exp]	10.95	0.9569
AT1G71350			eukaryotic translation initiat...		Potri.013G096600 [exp]	14.56	0.9625
AT1G16810			unknown protein		Potri.005G174400 [exp]	16.91	0.9454
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.001G054400 [exp]	17.54	0.9304	CPN60.1

Compare expression of checked genes

Potri.011G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.