Plant FIBer expression Database

Potri.011G085700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55570 68 / 3e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G085501
[exp]
231 / 3e-76 AT5G55570 114 / 1e-31 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008950
[exp]
61 / 2e-11 AT5G55570 114 / 1e-33 unknown protein
Lus10028870
[exp]
59 / 4e-11 AT5G55570 114 / 2e-33 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G085700.2 pacid=42781897 polypeptide=Potri.011G085700.2.p locus=Potri.011G085700 ID=Potri.011G085700.2.v4.1 annot-version=v4.1
ATGGAAGCAACAGCAATTTCTTCTTCTTTAAAGCTGTTAATAACATTTCCTGCAAACAAGAAAGCTCTAATTACTACTAGGAAGAAGAGAGATACAATCC
AATTCTCCGATCAGTTTCCAAATTCAAAATCAAGTACCGGACACTATCCTTCTCCTACTGGGATTACAATTAATGGAAGAAGATTAAAAACCAGGTTCAA
GATCTCAGCCATCAATGACTATGGTATTTCGGCTGCAGCAGATATAGCCCAAGTGGAGGTCACCTGGCAAATTATTGTTGGAGCTATAGCTGGTGTAACA
CCCTTCGTTGTAGCTGGGATTGAGTTCAGCAAAAGAATACTTGCGCGCACCTCGACTAATCTCATGGGCCTTGAAGTTAACGATCATGTAAGCCTTCAGT
GGCCATCATATGAGCAACCACAGGGCTCGAACCTGAGACCACAAAGCGAGCAAACCTCTTGGTCCCAAGCTCTTACCACTGGACCACCATCTAGATGGTT
GACAAGGACTATTTTCGTTGCCCAGGATGTGGAGGGTTTCTACCGTGGCAGACATGGAAAAGATTCTTCTCTGGTTAGTGTGTGTGTGTATTTCGGTATT
CATATGTATTTTCTTATTTATATACACGAGGAGAGGTGTACTTTTACATATGTGATACTTTTAGTCGAAGATTGTTTTGATTATTTTTTAGTTTAA
AA sequence
>Potri.011G085700.2 pacid=42781897 polypeptide=Potri.011G085700.2.p locus=Potri.011G085700 ID=Potri.011G085700.2.v4.1 annot-version=v4.1
MEATAISSSLKLLITFPANKKALITTRKKRDTIQFSDQFPNSKSSTGHYPSPTGITINGRRLKTRFKISAINDYGISAAADIAQVEVTWQIIVGAIAGVT
PFVVAGIEFSKRILARTSTNLMGLEVNDHVSLQWPSYEQPQGSNLRPQSEQTSWSQALTTGPPSRWLTRTIFVAQDVEGFYRGRHGKDSSLVSVCVYFGI
HMYFLIYIHEERCTFTYVILLVEDCFDYFLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G55570 unknown protein Potri.011G085700
[exp]
0 1
AT4G10300 RmlC-like cupins superfamily p... Potri.013G089600
[exp]
1.00 0.9912
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Potri.004G014850
[exp]
2.44 0.9897
AT1G03130 PSAD-2 photosystem I subunit D-2 (.1) Potri.010G089400
[exp]
2.44 0.9841 PSAD1.1
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Potri.002G083500
[exp]
2.82 0.9863 NPQ4.1
AT5G23060 CaS calcium sensing receptor (.1) Potri.015G052200
[exp]
3.74 0.9840
AT5G57040 Lactoylglutathione lyase / gly... Potri.018G056200
[exp]
4.00 0.9840
AT5G14320 EMB3137 EMBRYO DEFECTIVE 3137, Ribosom... Potri.002G088300
[exp]
4.00 0.9778
AT5G17170 ENH1 enhancer of sos3-1, rubredoxin... Potri.019G042600
[exp]
6.00 0.9839
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Potri.008G101100
[exp]
7.41 0.9847
AT4G37930 SHMT1, STM, SHM... SERINE HYDROXYMETHYLTRANSFERAS... Potri.010G254700
[exp]
8.36 0.9789 SHMT7,SHM1.3

Potri.011G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.