Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20420 356 / 6e-122 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT5G45150 183 / 2e-51 RTL3 RNAse THREE-like protein 3 (.1) AT1G01040 175 / 1e-48 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT4G15417 132 / 1e-36 ATRTL1 RNAse II-like 1 (.1) AT3G43920 112 / 4e-27 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT5G20320 100 / 9e-23 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G03300 92 / 4e-20 ATDCL2, DCL2 dicer-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G226700 [exp] 174 / 3e-52 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.002G181400 [exp] 164 / 8e-45 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.018G047500 [exp] 108 / 7e-26 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.006G188800 [exp] 101 / 2e-23 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.008G075900 [exp] 100 / 5e-23 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 98 / 5e-22 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005141 [exp] 161 / 2e-46 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030177 [exp] 162 / 1e-44 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10000182 [exp] 149 / 1e-42 AT4G15417 230 / 5e-75 RNAse II-like 1 (.1) Lus10015141 [exp] 116 / 8e-31 AT4G15417 197 / 2e-63 RNAse II-like 1 (.1) Lus10016367 [exp] 107 / 4e-25 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019587 [exp] 106 / 4e-25 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10036447 [exp] 99 / 3e-22 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019757 [exp] 69 / 2e-12 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10003362 [exp] 47 / 8e-06 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10005142 [exp] 48 / 1e-05 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif CL0539 [poplar] [flax] RNase_III PF00636 [poplar] [flax] Ribonuclease_3 Ribonuclease III domain
Representative CDS sequence Show only first row Show all	>Potri.011G086700.1 pacid=42781485 polypeptide=Potri.011G086700.1.p locus=Potri.011G086700 ID=Potri.011G086700.1.v4.1 annot-version=v4.1 ATGGAGGCATCGGTATTTGCAGTGGAAAAAATCCTAAACTACAAATTCAAAAACAAACGGCATCTAGAGGAAGCATTAACGCACTCCTCCTACACAGACT CAGCTTCTTACCAGCGGATGGAGTTCTTAGGGGACGCGGCGCTGGGTCTTGCGCTGAGTAATTATGTGTATTTGGCTTACCCTCAGCTGGATCCTGGTCA TTTGTCTCTTTTGCGTGCTGCTAATATTAGTACTGAGAAACTGGCGCGTGTGGCCATTAAGCATGGTCTTTACAGGTTTGTTAGACACAATGCCACTGCT CTTGATGATAAGGTTAAGGAATTTAGTGATGCTGTGAGTGGAGAAGATGATGATGATGCTTTAGTATATGGCGGGTCAATAAAGGCACCGAAGATTCTTG CTGATATTGTGGAGTCTGTTGCTGCTGCTGTTTATGTTGATGTCGATTTGGATCTTCAAACATTTTGGGTGATATTTAGGGGTATTTTGGAGCCAATAGT TACCCTCGAAGACTTGCAGCAGCAACCACAACCGGTGACTATGTTGTTTGAGCGGTGTCAAAAGCAAGGAAAGAATGTTGATATTAAACATTGGAAAAAT GAGGCCAAAAGTATTGCCAGTGTCTATGTAGATGGACAATTTATCGCTTCCAGTTCGTCTGAGCAAAAAGAAATTGCAAAGCTTAATGCCGCCAAGGGGG CCTTGCTCAAACTATCAAATTCATTCCCTACTAATCTAAATAATGTTTCTCTTCTTGATATTTTTGATGGGTCTTCTTTCGAGATTGAAGGCGCCAAACA GAAGTTACATGAACTTTGCGGCAAGAAAAAATGGCCCAAACCAAATTACAACATTGAGAATGATATGGGTCCTCCACATGAGAAGAAGTTTGTATGCTCA GTTCAAATTGCAACAGTAGATGGTATTCTATATGTGACGGGAGATGAAAGAACGAGAGTAAAGGATGCAGAAAATTCCGCTGCTTCATCAATGATCCGTG CTTTACAGGACACTGATTATCTGTGA
AA sequence Show only first row Show all	>Potri.011G086700.1 pacid=42781485 polypeptide=Potri.011G086700.1.p locus=Potri.011G086700 ID=Potri.011G086700.1.v4.1 annot-version=v4.1 MEASVFAVEKILNYKFKNKRHLEEALTHSSYTDSASYQRMEFLGDAALGLALSNYVYLAYPQLDPGHLSLLRAANISTEKLARVAIKHGLYRFVRHNATA LDDKVKEFSDAVSGEDDDDALVYGGSIKAPKILADIVESVAAAVYVDVDLDLQTFWVIFRGILEPIVTLEDLQQQPQPVTMLFERCQKQGKNVDIKHWKN EAKSIASVYVDGQFIASSSSEQKEIAKLNAAKGALLKLSNSFPTNLNNVSLLDIFDGSSFEIEGAKQKLHELCGKKKWPKPNYNIENDMGPPHEKKFVCS VQIATVDGILYVTGDERTRVKDAENSAASSMIRALQDTDYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20420		RTL2, ATRTL2	RNASEIII-LIKE 2, RNAse THREE-l...		Potri.011G086700 [exp]	0	1
AT5G62960			unknown protein		Potri.015G078200 [exp]	1.73	0.7788
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.001G387100 [exp]	9.74	0.6799
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.008G052900 [exp]	11.31	0.6531
AT5G48970			Mitochondrial substrate carrie...		Potri.008G210000 [exp]	11.48	0.6870
AT1G43245			SET domain-containing protein ...		Potri.005G193500 [exp]	14.49	0.6881	SDG954
AT2G46540			unknown protein		Potri.014G100250 [exp]	14.86	0.6501
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.005G152500 [exp]	21.67	0.6727
AT5G12100			pentatricopeptide (PPR) repeat...		Potri.010G249800 [exp]	23.47	0.6459
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.003G105000 [exp]	24.81	0.6768
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	36.27	0.5882

Compare expression of checked genes

Potri.011G086700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.