Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20800 538 / 0 Cell differentiation, Rcd1-like protein (.1) AT5G12980 476 / 7e-171 Cell differentiation, Rcd1-like protein (.1) AT2G32550 150 / 5e-43 Cell differentiation, Rcd1-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359300 [exp] 596 / 0 AT3G20800 530 / 0.0 Cell differentiation, Rcd1-like protein (.1) Potri.014G155500 [exp] 295 / 4e-99 AT5G12980 294 / 4e-99 Cell differentiation, Rcd1-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009728 [exp] 555 / 0 AT3G20800 536 / 0.0 Cell differentiation, Rcd1-like protein (.1) Lus10031542 [exp] 230 / 1e-73 AT3G20800 235 / 2e-75 Cell differentiation, Rcd1-like protein (.1) Lus10015136 [exp] 217 / 8e-68 AT3G20800 219 / 1e-68 Cell differentiation, Rcd1-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04078 [poplar] [flax] Rcd1 Cell differentiation family, Rcd1-like
Representative CDS sequence Show only first row Show all	>Potri.011G086800.1 pacid=42780525 polypeptide=Potri.011G086800.1.p locus=Potri.011G086800 ID=Potri.011G086800.1.v4.1 annot-version=v4.1 ATGGCAAACCTTCCTCAATCTCTGTCGATGAACACACCTTTCGGAGGACCAAGCGCGTCTAATCCCGCCGCCGCCGCTGGAGCTCCCGCCAACAAAGACC GGAAGATGGCATCAGCAGAGCACCTGGTTCTTGACCTAAGCAATCCTGATCTTCGTGAAAACGCCCTTCTTGAGCTCTCTAAGAAGAGAGAATTATTTCA AGATTTGGCTCCATTGTTGTGGAATTCTTTTGGTACAATTGCTGCATTGTTACAGGAGATTGTTTCGATATACCCAGTTTTATCACCACCTAACTTAAGT CCCGCACAATCAAATCGAGTTTGCAATGCCCTAGCACTTCTTCAGTGTGTAGCTTCACATCCTGACACGAGGATGTTGTTTCTCAATGCTCATATACCTT TATATCTCTACCCTTTCCTAAATACAACTAGCAAATCAAGGCCTTTCGAGTACCTAAGGCTTACTAGTTTAGGTGTCATTGGTGCCCTAGTGAAGGTTGA TGACACAGAAGTTATTAGTTTCCTTCTTTCTACTGAGATTATTCCGCTATGTCTGCGTACTATGGAGATGGGAAGTGAATTATCAAAAACAGTTGCCACA TTTATAGTTCAAAAGATTTTATTGGATGATGTGGGCCTGGATTATATTTGCACTACAGCAGAACGGTTTTTTGCAGTGGGCCGGGTTTTGGGGAACATGG TTGCAGCACTTGCTGAACAACCCTCGTCACGGTTATTAAAACATATCATCCGATGTTACCTTCGACTTTCAGATAATCCAAGGGCTTGTCATGCATTACG AAGTTGCCTGCCAGACATGCTGAGAGATGCTACCTTCAGTAGCTGCCTTCGTGAAGATCCAACAACAAGGCGATGGCTGCAACAGTTGCTTCACAATGTC GGAGGGAATCGGGTTCCAGGACTTCAGGCTGGGGGAGGATTTGATCATATGCTGGTGAACTAA
AA sequence Show only first row Show all	>Potri.011G086800.1 pacid=42780525 polypeptide=Potri.011G086800.1.p locus=Potri.011G086800 ID=Potri.011G086800.1.v4.1 annot-version=v4.1 MANLPQSLSMNTPFGGPSASNPAAAAGAPANKDRKMASAEHLVLDLSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLS PAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVAT FIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACHALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNV GGNRVPGLQAGGGFDHMLVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20800			Cell differentiation, Rcd1-lik...		Potri.011G086800 [exp]	0	1
AT3G48480			Cysteine proteinases superfami...		Potri.015G090800 [exp]	3.87	0.9213
AT4G25770			alpha/beta-Hydrolases superfam...		Potri.018G096035 [exp]	13.41	0.9089
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Potri.008G076900 [exp]	17.94	0.9097
AT3G13440			S-adenosyl-L-methionine-depend...		Potri.001G073700 [exp]	21.79	0.9027
AT2G26530		AR781	Protein of unknown function (D...		Potri.001G274000 [exp]	22.13	0.9120
AT3G55870			ADC synthase superfamily prote...		Potri.008G066600 [exp]	24.49	0.9123	Pt-ASA1.1,ASA%2C,pseudogene
AT3G20800			Cell differentiation, Rcd1-lik...		Potri.001G359300 [exp]	25.74	0.7782
					Potri.012G008845 [exp]	27.65	0.9112
AT4G22000			unknown protein		Potri.015G012700 [exp]	28.28	0.8706
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	30.16	0.8643

Compare expression of checked genes

Potri.011G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.